FMO07432.5prime Sequence
794 bp (372 high quality bases) assembled on 2008-10-22
> FMO07432.5prime
CAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTTATGGCCAT
CCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCACCACGACCA
GACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCTCTCGCTGG
GCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCCAGGACTCG
CCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATACGGCGATGG
AGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGATGCGGTGA
ATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCGGCGGGGGT
GGCTGCATCGGCGGTTCCGGCCTGGCTTCGGGCGGAACTTTGGAGCCATG
TGGATCTCCGGCGGGATGCGGCCTATGCCGGCCCCTCCAATGTGCCCCCG
GGCGGCATCCCAGATAGACCCTCTGCCTGGGCCCCAGATTCCCGATTGGG
AGGCTCTTGATACACGTCGAGCGGCATTCCGATAGTCATAGCAAGCAGCA
GCCCGGTGCTAATGTGAGTGTGCGCGGCTGCAACGTGAACACCGGAAGCT
TACAGAGAGGCGTGAGCACAAGATGAAAGAGCGTGACCGGAGCCCAAATG
CATCATCTCAGGCTCGGCTGCGCAAACGGTGCGCCTTCCGTTATACCAGT
ATAATTAATTCACTCTCCACCCCTATATGGCTATCCAGGTAAATTTTGTT
ATTACCACTACACAACCTTTTATTAACCACAAGTTTAAAAAATA
FMO07432.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubx-RF | 4180 | CG10388-RF | 964..1572 | 9..614 | 1830 | 87.5 | Plus |
| Ubx-RE | 3117 | CG10388-RE | 964..1572 | 9..614 | 1830 | 87.5 | Plus |
| Ubx-RD | 2784 | CG10388-RD | 964..1572 | 9..614 | 1830 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16733119..16733463 | 353..9 | 1725 | 100 | Minus |
| 3R | 32079331 | 3R | 16732855..16733021 | 614..449 | 210 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:31 has no hits.
FMO07432.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:32 Download gff for
FMO07432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RD | 1157..1508 | 1..353 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:34 Download gff for
FMO07432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RD | 1157..1508 | 1..353 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:32 Download gff for
FMO07432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubx-RD | 957..1308 | 1..353 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:32 Download gff for
FMO07432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16733119..16733470 | 1..353 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:34 Download gff for
FMO07432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12558841..12559192 | 1..353 | 99 | | Minus |
