FMO07434.5prime Sequence
1217 bp (1046 high quality bases) assembled on 2008-10-22
> FMO07434.5prime
CAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCCTTTTCGCA
GGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGGGGCGTCTT
TATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGATCGTGGAAA
TGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGCTCCGCGTG
TCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAGACGGGTTC
TATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGACCTCTCCCG
AAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCAGCATATTC
AGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCGGATCCACC
ATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCGCGGCAGCG
AAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAGGGCGAGAC
TCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTGAAACGCAA
GCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGAGGCACTCG
AGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCCGGGAAGAG
CTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTATGGTTCTC
CAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAAACTCCGGGC
TTTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTGTTGGGCTC
AGTGGGGCGACAGCACCACTTGGCTACGGCCCTTTGGGAGTTGGTTCGAT
GGCGGGCTACAGTCCTGCGCCGGGAACCACTGCCACTGGAGCTGGGATGA
ACGACGGAGTTCACCACGCCGCACACGCACCAGCTCCCACCACAGCGCAG
CAACGGCTGCTGCAGCGGCACACCATCACACAACAGATGGTGGCTACGAT
TTGGTCCAAAGTGCCGCTCACACGATTTCCCGGGGGCTTTGCTCAGCCGG
ACACTTTGTAGTCAAAACTATTACATCAAGACTATTTCAGCTGAACATGA
CGACTTCTCCAGGCTCACGCGCGCGTGTCTCAAGATTCTGCCCTCTACCT
ACGACCTATCGGACGTGAGTCTCTGACTGTCAAAGCGCTTACGAGCCGCG
CTGCCAATTACATATAT
FMO07434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gsb-n-RA | 2237 | CG2692-RA | 323..1441 | 8..1118 | 5275 | 98.7 | Plus |
| gsb-RA | 1649 | CG3388-RA | 227..447 | 54..274 | 460 | 81.6 | Plus |
| prd-RB | 2459 | CG6716-RB | 392..594 | 81..283 | 370 | 78.8 | Plus |
| gsb-RA | 1649 | CG3388-RA | 746..912 | 561..727 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25041340..25041928 | 1074..491 | 2590 | 98 | Minus |
| 2R | 25286936 | 2R | 25051309..25051625 | 381..65 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 25048046..25048160 | 493..379 | 575 | 100 | Minus |
| 2R | 25286936 | 2R | 25063228..25063441 | 61..274 | 410 | 79.4 | Plus |
| 2L | 23513712 | 2L | 12084860..12085062 | 283..81 | 370 | 78.8 | Minus |
| 2R | 25286936 | 2R | 25051950..25052009 | 67..8 | 300 | 100 | Minus |
| 2R | 25286936 | 2R | 25063740..25063906 | 561..727 | 220 | 75.4 | Plus |
| 2L | 23513712 | 2L | 12084344..12084530 | 727..541 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:04 has no hits.
FMO07434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:53 Download gff for
FMO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-n-RA | 310..1442 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:25 Download gff for
FMO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-n-RA | 314..1446 | 1..1125 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:21 Download gff for
FMO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gsb-n-RA | 314..1446 | 1..1125 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:21 Download gff for
FMO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25041340..25041926 | 493..1074 | 98 | <- | Minus |
| 2R | 25048047..25048158 | 381..492 | 100 | <- | Minus |
| 2R | 25051310..25051623 | 67..380 | 100 | <- | Minus |
| 2R | 25051951..25052018 | 1..66 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:25 Download gff for
FMO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20928863..20929449 | 493..1074 | 98 | <- | Minus |
| arm_2R | 20935570..20935681 | 381..492 | 100 | <- | Minus |
| arm_2R | 20938833..20939146 | 67..380 | 100 | <- | Minus |
| arm_2R | 20939474..20939541 | 1..66 | 95 | | Minus |
