FMO07436.5prime Sequence
1187 bp (1046 high quality bases) assembled on 2008-10-22
> FMO07436.5prime
CAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTTGTATGGAC
GAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGATCCTGTGCT
CGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTGTACCGAAC
GTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCGTTTCCTGC
GTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGCGAGCAGAG
CTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCCGGAAAACC
AAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAATAAACCAG
AAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAAATGACAAA
AACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACTCCAAGCGA
AGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCACCCTGCAT
CCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATGATCCCAAA
GGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGGCTACTACA
ACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGTTAAGGACC
CACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGCACTTATAT
GCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAGCAAGCCAG
CGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAGATCACCTT
AAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCCTGCAGCCA
GTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCATCGCAGAG
AGCACAAACAAAGGCCGGGCTCTTCAAATCGGAGTCACGAAAGATCCTGA
CTCGGACGACAGCGATCAGCGCAGGATCTAAAACCAAAGTGGACTAGAAC
ACCTTCATGGCACGTGCAGCATTCCACTATGCTAAAGCCGAAACGATATT
GCGATATTTTGCCAAAGAAGTTCAGTAGTGTCCTAGCCTTGACGGCTTGC
CTTACTCACAATGCGCCACATCACCTTACATGTACCTATTGTTTCGGAGG
AGTTCAAAACAGAAAACACTCTCTAATACAGGAGTAG
FMO07436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2678-RA | 1811 | CG2678-RA | 234..1402 | 9..1166 | 5270 | 97.7 | Plus |
| CG2678-RB | 2003 | CG2678-RB | 234..1271 | 9..1040 | 5025 | 99.3 | Plus |
| CG2678-RB | 2003 | CG2678-RB | 1371..1497 | 1044..1166 | 250 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7914084..7914637 | 9..562 | 2770 | 100 | Plus |
| 3R | 32079331 | 3R | 7914790..7915275 | 561..1040 | 2115 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:14 has no hits.
FMO07436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:23 Download gff for
FMO07436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RA | 228..1409 | 9..1182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:42 Download gff for
FMO07436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RA | 234..1415 | 9..1182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:02 Download gff for
FMO07436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RA | 234..1415 | 9..1182 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:02 Download gff for
FMO07436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7914084..7914637 | 9..562 | 100 | -> | Plus |
| 3R | 7914792..7915274 | 563..1039 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:42 Download gff for
FMO07436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3739806..3740359 | 9..562 | 100 | -> | Plus |
| arm_3R | 3740514..3740996 | 563..1039 | 98 | -> | Plus |
