FMO07437.5prime Sequence
1201 bp (1001 high quality bases) assembled on 2008-10-22
> FMO07437.5prime
CAGTCGACATGGAGCGCAAGGAAGTGGACACCCAGCAGTTCATCGACCAT
ACGCTGCTGGCGAACCACTTCATCATGGATCTGATAGATCAGACCTACAA
ATCCGAAGGACCCACGAATCTGAGCACGAATCCCAGTTCCGGCAACTCCG
AGAGCGGAGTGGGTTACGTGGAAAAGGAATCGCTGACGCCGGAGCTGAAT
TTCCACAACACCATCTTTCAGTTTGTGAACAAATCATCGCCAGAAAATGA
TGTTGTACCCCACCAGGTGGATGCGCAGCCCACATTTCCGGCCCTGGCCA
TTGAGCCCACAGTGCCCATCGACGTGTCCACAGGTCTACACGAGGACGAG
GATCTCCTCTATGCGCACAACAACGCCTCCTGCACGAACGCCCGCAAGGT
GCTGCCCCACAAGAAACGCATTTCGCGGAAGCTCAAAGGCAACATAGACC
CCGAACTGGACCACCAGCACAAGCATGTCCAGGATGTGGCACCCTCTTCC
CTGTATAGCTGTGAAATATGCGGCTATGCTGTGCACACCCAATTGGACTT
CTTTGCCCATCTGAAGCAGCACTACGAGCCCACCGTTCTGGAGCAGCGCC
TGGTCGTCCAGGATCCCCAGCAACAGCACCAGCAAAAGGAACCCCTCGAC
ATGTGTGGTTTGTCTGCGCAGGATAAGCTGCAACAGGAGCAGGCCAAATT
GGATCAGGTTTTTCAGGACGTGCAGCTTAATTTTGAGAACTTTCACAACA
TCAGTCACCATGTGAACGATGTTGCCAACGTCGGAGTGAATATGGTGCTG
CATGGACAAGCCACGGACAAATTAAATGCCGTGGTGGTTAACACCAGCAG
CACTCCGAATTCTGTACCCGTGGTGGATGACGTCGAGTTCAGCGATACGA
AGACATGCTCGAGGGTATCCGCAATGTGTGACAGTTTCATAGAAGACACC
TGCGATGACTGGTGGATCTTGAATGACCTCCAGCGGAATGACGGCACCCT
GGTTAATACACTTCAGGATATCACATTCCGCCCCTTTGCTGCAGGAAGCC
CGCACCAGCTTCCTTCCGAGGCCAGCCTACCCCATGCTTAAAGAGAAATC
CCATGTAAGGCCACCATGCCCCGATTCTTTAGTTCCGAAAGCGTACCTTA
AGACCACTGAACCGTTCTAGGCCTGCAGAGCCAATAACCGAACCATGGTA
A
FMO07437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3407-RA | 2418 | CG3407-RA | 81..1201 | 9..1116 | 4975 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3812595..3813221 | 677..51 | 3135 | 100 | Minus |
| 2L | 23513712 | 2L | 3812200..3812536 | 1004..676 | 1340 | 97.3 | Minus |
| 2L | 23513712 | 2L | 3813289..3813330 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:48 has no hits.
FMO07437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:31 Download gff for
FMO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 72..1108 | 2..1027 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:23 Download gff for
FMO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 75..1111 | 2..1027 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:44 Download gff for
FMO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3407-RA | 75..1111 | 2..1027 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:44 Download gff for
FMO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3812173..3812534 | 678..1027 | 96 | <- | Minus |
| 2L | 3812595..3813221 | 51..677 | 100 | <- | Minus |
| 2L | 3813289..3813336 | 2..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:23 Download gff for
FMO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3812173..3812534 | 678..1027 | 96 | <- | Minus |
| arm_2L | 3812595..3813221 | 51..677 | 100 | <- | Minus |
| arm_2L | 3813289..3813336 | 2..50 | 92 | | Minus |
