FMO07438.5prime Sequence
1224 bp (1042 high quality bases) assembled on 2008-10-22
> FMO07438.5prime
CAGTCGACATGGATACTTGCTTCTTCTGCGGCGCCGTCGATCTGAGCGAC
ACGGGCTCCTCCAGCTCCATGCGCTACGAGACGCTGTCGGCCAAGGTGCC
GTCGTCGCAGAAAACAGTGTCCCTGGTGCTCACCCACCTGGCCAACTGCA
TCCAGACGCAGCTGGACCTGAAGCCCGGCGCCCGGCTGTGCCCGCGCTGC
TTTCAGGAGCTCTCCGACTACGACACGATCATGGTGAACCTGATGACCAC
CCAGAAGAGGCTGACGACCCAGCTAAAGGGCGCTCTAAAGTCCGAGTTCG
AGGTGCCGGAGTCCGGCGAGGACATACTCGTGGAGGAGGTGGAGATACCC
CAAAGCGATGTCGAGACAGACGCCGATGCCGAGGCGGACGCCCTGTTCGT
GGAGCTGGTCAAGGATCAGGAGGAGTCCGACACGGAGATAAAGAGAGAGT
TCGTGGACGAGGAGGAGGAGGAGGACGACGACGACGACGACGAGTTCATC
TGCGAGGACGTGGATGTGGGCGACTCCGAGGCCCTGTATGGCAAGTCCTC
CGATGGCGAGGACAGGCCGACGAAGAAGCGCGTCAAGCAGGAGTGCACTA
CCTGCGGCAAGGTGTACAACTCCTGGTATCAACTGCAGAAGCACATCAGC
GAGGAGCACTCCAAGCAGCCCAACCACATCTGCCCCATCTGCGGGGTGAT
CCGGCGCGACGAGGAGTACTTGGAGCTGCACATGAATCTGCACGAGGGCA
AGACGGAAAAGCAATGCCGCTACTGCCCCAAGAGCTTCTCGCGCCCGGTG
AACACCCTGCGCCACATGCGCATGCACTGGGACAAGAAGAAGTACCAGTG
CGAGAAGTGCGGCCTGAGGTTCTCCCAGGACAACCTACTCTACAACCACC
GGCTGCGCCACGAGGCTGAGGAGACCCCATCATATGCAGCATCTGCATGT
GTCGTTCAGTCGCGGCAGACCTTCAACCATCACCCGCTCATTCACAAGGA
GAACGCCCAGGACACTACTGCTCCGTCTGCCCAGTCCTTCACCGGAGCGC
CTACCACCCTCAGATGCCATGAGACCCCGAGGGCGACGTCGTTTACGGGG
TCCGAAGAGCCCCGTCGCACGCCGCAGGTGGTGAGGACTGCAGGTGTCCT
CACATCGGAGCGGCTACGTTCATGTCCAACGGTGAAACTCGCCCTCGTTC
ATGGCCATACTACCTCTCGAGACA
FMO07438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sry-delta-RA | 1546 | CG17958-RA | 139..1238 | 9..1101 | 5140 | 98.5 | Plus |
| Sry-beta-RB | 3300 | CG7938-RB | 746..883 | 726..863 | 300 | 81.2 | Plus |
| Sry-beta-RA | 1260 | CG7938-RA | 746..883 | 726..863 | 300 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30043479..30044520 | 9..1044 | 4885 | 99 | Plus |
| 3R | 32079331 | 3R | 30040517..30040654 | 726..863 | 300 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:14 has no hits.
FMO07438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:32 Download gff for
FMO07438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-delta-RA | 127..1250 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:38 Download gff for
FMO07438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-delta-RA | 132..1255 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:25 Download gff for
FMO07438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sry-delta-RA | 132..1255 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:25 Download gff for
FMO07438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30043472..30044576 | 1..1099 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:38 Download gff for
FMO07438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25869194..25870298 | 1..1099 | 98 | -> | Plus |
