FMO07439.5prime Sequence
1142 bp (1026 high quality bases) assembled on 2008-10-22
> FMO07439.5prime
CAGTCGACATGCCAAGGAGGACAAAAAAGGACGAGGACCCCGAGGATCTG
CAGACCTTCCTCAACAATTTCCATAAGGAGATCGAAGGCAACAGCGATGA
GAAGGTGGTAAACACGATTTTGGAGGCCATCAGCGCCGAGGCCATCGACT
TGGATGAAAATGGTGCGGAGGCTGGTGGATCGAAACCGATGGAGGAGGCG
GAGGCTGATTTGGATCATGCGGAGGAAGCGGAGGAGGAGGAGGAGGACGA
CGAGGATAAGTATTTCATAGATGACGAGGGCAACTGCTATATCAAGACTA
CGCCCAAGAAGCAAAAGGAGCTACAAAAGAAGCTCAAACAGGCGGCTGCC
AAGCCGGGGAAAGCTACACGTTCCGTGGTCAGTACAGCCACCAATAAATC
CATCAATTTGCGGCCAGCCAAATCGACACCGAAAGCGACTACTTCGAAGC
CTCCCCCAGAACCCAAGGCAATTAGCGTTCGACCAGCCCGAGCAGCTGCA
GCCAAGGCGAAGCAATCGGCGATGCCACCGCCACCGGCATTAGTGGTCAA
AGTACCGGCACCCAGGGGCAGGCCTAGAAAGAACCCTGTCATACCGAAGC
CTGAACCCATGGACTTGGAGCGGGAGCTCGAGGAGCTGGTAGATGAGCCC
GACATCAGTTCAATGGTGACAGAATTGTCGGACTATACCGTAGACGAAGC
TGCCGTAGAGGCAGCAACAGCTACGCTGACGCCAAACGAGGCTGAGGTCT
ACGAATTTGAGGACAATGCGACGACAGAGGATGAGAATGCCGACAAGAAG
GACGTAGACTTTGTGCTAAGCAACAAGGAGGTGAAGCTGAAGACAGCTTC
TTCTACCAGCCAGAATTCGAATGCATCGGGACATAAGTACTCATGCCCAC
ACTGCCCGTATACGCGAGCAGAAGTTTCTGATCACGCGCCACTCACGAGT
CATGACGTCGAGCCATCCTTCAAGTGCTCATCTGCGGAGGTTCCTTTCGA
TCGAACGTGGCCTGCAAAACCACATAAACACGCACATGGGCAATAGCCGC
CAAGGTGCAGCCTCTGCCAGCGCCCTTCACACCAGCGGCGAGCTGTTCCG
TCTCACTCTGCTACAAGCAATCTTATGAAAACCGGCCACAGT
FMO07439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTCF-RA | 2892 | CG8591-RA | 136..1253 | 9..1119 | 5175 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7355279..7356005 | 1119..400 | 2985 | 96.6 | Minus |
| 3L | 28110227 | 3L | 7356067..7356457 | 399..9 | 1955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:56 has no hits.
FMO07439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:34 Download gff for
FMO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 111..1240 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:13 Download gff for
FMO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 128..1257 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:59 Download gff for
FMO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTCF-RA | 128..1257 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:59 Download gff for
FMO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7355275..7356005 | 400..1123 | 97 | <- | Minus |
| 3L | 7356067..7356461 | 1..399 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:13 Download gff for
FMO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7348375..7349105 | 400..1123 | 97 | <- | Minus |
| arm_3L | 7349167..7349561 | 1..399 | 98 | | Minus |
