FMO07440.5prime Sequence
1205 bp (1018 high quality bases) assembled on 2008-10-22
> FMO07440.5prime
CAGTCGACATGGGATTGTTATATAAGGGTTCCAAACTCCTGAACACAATT
CTGGATTCCCTGGAAGATCAAGAGGGTGGAGCTATGTACATATCGTGCGA
TGTCTCAAACGGCGGTCCTGTGGAACCAGAGACGGGCTATGTGCCCAACA
ATCCCCTGTTCGGCCTGGCGCTGGACAGCCCTCAGCAAGAGTGCGCCGCT
TCCTGCGTCGGCTGCCTATCCTGCCAGGGCAGCACCGCCCTGCCCATCTC
CTCGCTCACCAGCAGCGACTTCGACTGCGGCGGCTGTTTCGATCCCACGA
TTGGAGTGGGCGTGGGCATCGGTGGCGGCCACATCCAGATCAGCACGACA
CCACCGGCGAGCAGCGGCAACGGGAGCAGCAACAACGGTGCCGGAGGAGG
CTCCTCGGGTAATCACGGCTACTGGAGCACCGACGAGATGGCTTCCACAT
TTCCCGGCCTACCGCCGCTGGACATCGATCCGCTGCCCAGCCTGTTCCCA
TTCTCGCCCTGCGGCGCTTCCTACAACTTTGCCGCCGGCAATCCGCACCA
GGCCGCCTCACTCTCCTACACAGTGCATCCGCACCAGATGCTCATTTCGC
CGAACTCCCACAATCATGGCCAGATGCACTCGCAGCACCAGCAGCACCAG
CACCAGCAATCCCAAGTCCAGGCATCGCACGTAGGCAACTCTCTCCTCCA
AAGCAGTGGTGGCAACAATATCGGCAGTAATGGTAGTGCCGGAGGAGTGG
CCAACGCTGCCAGTTGCTACTATGAAACCAGTGCTGGAACGGCCGCACCA
CCTCCTCCTCCGGCGGCAGCCATGTATCCCAGCATGAGCGTGAACGTCAG
CATGAACATGACCATGCACCATGGCTACGTGCCGGTGATGCACGCGGCGT
GCCAATGCAGTGCTCCCAGATGACTGGACGCCACCAGTAACTCCACCTCG
GCGGCAGCAGCAGCAGCGGCGTTAATGTGCTTATACCCACCGCTGCTGAG
TCCCGTTCACTATCTGCCTCGGCCACATATTCCTTTACAGCGGATTCCGG
CACCGGCCCCCACGGTCTGGTGCCCTGCCCCCGCTGACGGGAGGCGAAAG
GATCCCATCTGCCGCCGCATCCTTTGCTGCTCTATTCCAGGGTGCATCGG
ATTCACCGGCCACTAAAGTCTCACTTTATCGAGTCACGCCCTGGGCCTAT
AACTT
FMO07440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gl-RC | 3003 | CG7672-RC | 313..1432 | 8..1117 | 5150 | 98 | Plus |
| gl-RB | 3399 | CG7672-RB | 313..1432 | 8..1117 | 5150 | 98 | Plus |
| gl-RA | 3003 | CG7672-RA | 313..1432 | 8..1117 | 5150 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18369914..18370838 | 1099..183 | 4050 | 97.6 | Minus |
| 3R | 32079331 | 3R | 18371319..18371450 | 185..54 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 18371733..18371779 | 54..8 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1577 | 609..659 | 120 | 70.6 | Plus |
FMO07440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:35 Download gff for
FMO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RB | 287..1404 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:22 Download gff for
FMO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RA | 308..1416 | 1..1100 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:43 Download gff for
FMO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gl-RA | 308..1416 | 1..1100 | 97 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:43 Download gff for
FMO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18369910..18370835 | 186..1100 | 97 | <- | Minus |
| 3R | 18371319..18371449 | 55..185 | 100 | <- | Minus |
| 3R | 18371733..18371784 | 1..54 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:22 Download gff for
FMO07440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14195632..14196557 | 186..1100 | 97 | <- | Minus |
| arm_3R | 14197041..14197171 | 55..185 | 100 | <- | Minus |
| arm_3R | 14197455..14197506 | 1..54 | 94 | | Minus |
