FMO07441.5prime Sequence
1232 bp (1006 high quality bases) assembled on 2008-10-22
> FMO07441.5prime
CAGTCGACATGTCCAACCAAATGGAGTTTATTATGCAACTCTACATGATG
AACTTGATGAAGCAGCAGCAGCAAATGCAGCTCCAGCTTCCGCAGCAGCA
ACAGCAGCAGCAGCTGGCTGGATACACTTACACACAGAACGAGGATATCT
CTAGCAGCACATCCGTGCAGCAGCAACAGCAGCAGCAGCAGGAGCAACTG
CAGCAGCCACAGCCAGATCTCCGCAAGACAAGAACGCACAAGCGCATTAG
CTCGCAAAACACCAACTGTAGTAGTAGCCGTAGTTGTAGTCCCAATAGTA
ATTTGATTGCTTTTCAACCACAACAATACCCAGGCGCTACAGCGGCAACT
CCTTCCACTCCCAACAGCCACCCCAGCAACCTGGTCAACCAGATGCTGCT
CCAAAGCCTGCCGCCGCTGACGCAGCTCATGTTGCAGCAGCAGCAGCAGC
AACATTTGCTGACCACCTCCAACCTTCTACTAACACCCACCCACACCCCC
AGTTCGCTGGGCAAGCAGGATCCACTGCAGCATCCGTTGTTGCTGGGCCA
GTTTGCCGGCTCCGAACAGATGGCCACAAATAACTTCCTTCAATCATCCA
CAGTGACCTCCACGCCCATCGAGAGAGAGAAGGCAGCCACACCAGCACCC
TCCGCCGGAGCAACTGCCGGCAACCTTTCGGCGGCCCAGGTCAAGTTTGA
GCAGGAGTCCGCCGACGACGATGAGGACGATGATAAGCCGCTGTCCAGCC
TCACCAGCTGCAGCTCCTCGGGCCACACCAACGCCAGCTCCGAGAAGCTG
CTGTTGTCGGGCGTCCATCCGCTGGAGTCAACCACCGACAGCCTAGACTC
ACCCAGCATGTATACGCCCGTCAAGCAGCCGGCGGACTCATCGTACGGAC
TCATCACACCCGTCGACAGTGATCTGACCCCAACACACCCCTCCAACCGA
CCCAAACAATTTCCCTGCTGACGCCGCCGTCGAGTGAAGCAAGCAAGAGC
CCTGGTGAGCTTCTCGCCGCAGCGGCCCTGATGCTCTTGCCTCAGAAACG
AGAGTACTGAAAAACCTGGCGGAAAGGGTCCTCCTTACTGGAAATGCAAG
AAACGCCTGGCAGCAAGAGAAACCTTCGGGAACCTCATGCCACGGGACCC
TGCCAGGTCAAATCTGGACAGAGGGCACTCTCTCTGGACCTTAAGTGTAC
AAGCGGCCATAGAGAAAGAGCCCTCATGAGAC
FMO07441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cas-RA | 3151 | CG2102-RA | 194..1353 | 9..1161 | 5045 | 96.6 | Plus |
| cas-RC | 2845 | CG2102-RC | 483..1047 | 604..1161 | 2070 | 93 | Plus |
| cas-RC | 2845 | CG2102-RC | 194..482 | 9..297 | 1445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5715761..5716612 | 860..9 | 4260 | 100 | Minus |
| 3R | 32079331 | 3R | 5715043..5715222 | 1037..860 | 605 | 92.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:35 has no hits.
FMO07441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:37 Download gff for
FMO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 689..1719 | 9..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:44 Download gff for
FMO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1224 | 9..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:52 Download gff for
FMO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cas-RA | 194..1224 | 9..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:52 Download gff for
FMO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5715043..5715221 | 861..1037 | 93 | <- | Minus |
| 3R | 5715761..5716612 | 9..860 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:44 Download gff for
FMO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1540765..1540943 | 861..1037 | 93 | <- | Minus |
| arm_3R | 1541483..1542334 | 9..860 | 100 | | Minus |
