FMO07442.5prime Sequence
1223 bp (983 high quality bases) assembled on 2008-10-22
> FMO07442.5prime
CAGTCGACATGTCCGTGCAGCAGTTCTGCCTGCGGTGGAACAACCACCAG
CCGAACTTCATCTCCGTGTGCTCCTCGCTGCTGCACAATGGCACCCTGGT
GGACGTCACCCTGGCAGCCGAGGGTCGCCAACTACAGGCCCACAAAATAG
TGCTATCCGCCTGCAGCTCGTACTTTCAGGCTTTGTTCACCACAAATCCG
TGCCAACATCCCATTGTCATCCTGAAGGACGTGCAGTACGATGACCTAAA
GACCATGGTGGACTTTATGTACTACGGCGAGGTAAATGTGTCGCAGGAGC
AGCTGCCGCACATCCTCAAGACCGCCGAGATGCTCAAGATCAAAGGCCTA
GCGGAGATGCCAACGGATCCGGCCAATCTTACCAAGTCGGATAGCAAGTC
CTCCACCGACGGCACCGAGATGGTGGGCGGTGCGGGAGTGGGCACTGGAG
CGGGCAACTCGGCTGGCAGCCTGGGAGCCGGCAGTGGAAGCAGCGTCGGC
GACTCCCTGTGGAGCAGCAGCGAGGCCCAACAGTTCCAGCAGCAGCAGCA
ACAGCAGGCCCAGCAACAGGCACAGCAGCAGCACCATCACCACCAGCAGC
AGCAGCAGTTGCAGCAGCAACAACAACAGGCGCAGCAGCAGCAACAACAG
CAGCAGCACCATCACCACCACCATCAGCAGCAGCAGAGCGGACAGGCGCA
GGCGGCGCAGACGCATCACCACCAGATGCGACGTACGCCGTCGCCTTTGA
GCGCTGGAACCTCGCCGGCCACCAGGCGCAAGCGCTTGCGCAAATCCTCG
AATAACGGTTTCTGGCGATCGCAACAACGCGGAGGAGCAGCACAAAGCTC
ACTGGGACGCGGGCAGTGGTGCCAGCAACGCCGGTCTCAGTCTCGCCCAG
ATGATCAGATGACATTGTGCGGGCGGCGCTTGTCGGCCACTCACTGCACG
CGGCTAAGCTGCTCAGGATCCGGCCAGCGCTGACTAAAGCAGCAGCCGCC
AGACTCGATTCTTGACGATTGACACGGACACTAACACATGCAATTTAGCC
CGAAGTCGAACTTTGCGGCGTGAACAACGATGCCTTGGAATCCCCGGCGT
ACCAACCATATCGAAACGATGCGCGACTCCAATTCTGCAACTCGGTTGCA
TGTCCATTTGATTCCAAATCCGCTTCCCGTTCCGCGTGCATCACATTGTT
TTTGGACAGGCGTAGAGAACGAC
FMO07442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BtbVII-RG | 3321 | CG43365-RG | 397..1511 | 8..1109 | 4925 | 97 | Plus |
| BtbVII-RF | 3943 | CG43365-RF | 397..1511 | 8..1109 | 4925 | 97 | Plus |
| BtbVII-RE | 4016 | CG43365-RE | 383..1497 | 8..1109 | 4925 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3150212..3150844 | 177..809 | 3165 | 100 | Plus |
| 3L | 28110227 | 3L | 3149982..3150154 | 8..180 | 865 | 100 | Plus |
| 3L | 28110227 | 3L | 3150929..3151169 | 810..1043 | 620 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:10 has no hits.
FMO07442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:38 Download gff for
FMO07442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RC | 362..1453 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:23 Download gff for
FMO07442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RE | 377..1468 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:17 Download gff for
FMO07442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BtbVII-RE | 377..1468 | 1..1084 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:17 Download gff for
FMO07442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3149976..3150153 | 1..179 | 97 | -> | Plus |
| 3L | 3150215..3150842 | 180..807 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:23 Download gff for
FMO07442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3149976..3150153 | 1..179 | 97 | -> | Plus |
| arm_3L | 3150215..3150842 | 180..807 | 100 | -> | Plus |
