FMO07445.5prime Sequence
1207 bp (1028 high quality bases) assembled on 2008-10-22
> FMO07445.5prime
CAGTCGACATGGAGCGTCGTCGCTTTAACATGAGCAGCATGTCACCCATG
GCGGATTCCACGCGGATTGACGCGTCGCTGTTAAACAATCGTCCGGCGGC
CAGTAATTTCCTGAGGGGACTGAGTCCCAAGGGGTCGAATACCTCGCTCA
ATGGCACACGCACTCCGGAGCGGTCCTTGATGAATCGCTCTGCCACATCG
TCCAGTACCATAACGCGACAGAAACTGAACCTCAGTCAGGTTGATCCCAG
AACCTTTGCCGATGTGCATAGCAGCGGACTGTCATCCCGGATCGTGGCCT
TAAGCGAACGCAGTGGTCTGCAACGCAGCATGTCCGCCAGCAATCTTTAC
AATCCCTTGACGCAGCCGCGCAGAGCGCCCGCTTCCCCGTTGCCCTACAA
GTCAAGGGCGCCGACGCTTTCGATCACGCAGATTGCACCACCGGAGCGCA
GCTTTTATTCCGGAAACACGCTGTCAAGCCTGTTGCGATCCAACTCCTTG
GTAGGGTTAGTGCCAAAGACCACCGAACAGGAGCAGCTTTCGAGAGAGAA
TCGACCCATATTGCACCCACCTCATCCACAGCATGAGAGCGAGCCAACTA
GAAGCGTGTTGGAGGAGCTTAAGGAGATCTCCCGAAAGCGCATCAACACT
GAAGATACGCAACAGGCTCAAGACTACACGAAAAGGAGTTGCCAGCAAAA
CGTGGACTTTGTGGACTTTGTGGCTCATCACCGTCAGCAACAGAAACTAC
GTAATTTGCAGCAACAACAGAATCAGTCCTTTAAAAGGCAACGAGAGCTG
ACGGTATCGGTTCCGCTCAGCATCATTCGACATCTTTGTCGGCTGCTTCT
CCTGCATTGCAACATATGAACTCGAATGGAACCATCTCCCCAACACAATC
TCCGGAGCAGTAGCCAAACGTCCCAATTGTAGCTACAGCAACGACATCAC
TTCCTCGCTGAGTTCCAGTTGCCGTCACAGCAACAAGAGAAGCTGTGACA
TGCGAGAAAGGTTTCAGCACAGCAAAAACCGACTCACTAGCTATGAGAAG
CTCGCCTGAACTCGCCGAAATGTTGCCAAAATCACGTAAGTGATGCTAGC
GGTAACAGCAATGAGCATGCGGTCTGAACTTGGCGCAGTTCTGCTTTCCG
ACATTCGTTTGCATTCAAGCATCCGAGGTGAGACCCTTAGCTTACCCTCT
TAAGTGC
FMO07445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14712-RA | 4250 | CG14712-RA | 182..1267 | 8..1082 | 5115 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11629315..11629721 | 248..654 | 2035 | 100 | Plus |
| 3R | 32079331 | 3R | 11629784..11630177 | 654..1043 | 1695 | 98.2 | Plus |
| 3R | 32079331 | 3R | 11629081..11629248 | 83..250 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 11628940..11629014 | 8..82 | 375 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2417 | 726..776 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1580 | 726..776 | 111 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2828 | 735..776 | 111 | 73.8 | Plus |
FMO07445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:41 Download gff for
FMO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 174..1329 | 1..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:28 Download gff for
FMO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 176..1331 | 1..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:49 Download gff for
FMO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14712-RA | 176..1331 | 1..1135 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:49 Download gff for
FMO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11628934..11629014 | 1..82 | 95 | -> | Plus |
| 3R | 11629081..11629248 | 83..250 | 100 | -> | Plus |
| 3R | 11629318..11629720 | 251..653 | 100 | -> | Plus |
| 3R | 11629784..11630287 | 654..1135 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:28 Download gff for
FMO07445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7454656..7454736 | 1..82 | 95 | -> | Plus |
| arm_3R | 7454803..7454970 | 83..250 | 100 | -> | Plus |
| arm_3R | 7455040..7455442 | 251..653 | 100 | -> | Plus |
| arm_3R | 7455506..7456009 | 654..1135 | 93 | | Plus |
