FMO07446.5prime Sequence
1207 bp (1041 high quality bases) assembled on 2008-10-22
> FMO07446.5prime
CAGTCGACATGGATCGCAAGAAGGTCCTGGAGCTTGACAAGATCTGCCGC
CTGTGCATCTCGGAGCGCAAGGAGATGCGCCCGCTGTTCAGCGAAAAGGT
GCCCGAAATGCTGATGGACTGTACCAGCGTGCGGGTGGAGCCCACGGAGG
GCTGGCCGGACAAGATCTGCGTGCAGTGCGTCCACGCCGTAAGCCGGAAT
CACGCCTTCAAGACGCTCGTCGAGCGCAGCGACAAGGAGCTGCGCGAGTA
TATCCGCGGTCTTACCGTGGCACTGGTAATGGAGGAGCAGCAGCAGCAGG
AGGCGGCAAACGCTAAGCAGCAGCTTCAGCTGGAGCGGAAGCAACAGCGA
CAGCTGCAGAAGCAACAGAAAATCCTCGAGGAGCAACTCCAGCAGCAGAT
AGTCCAGCAGCAACAGCATCAGCCTCCTGCCAAACCAAAACTGAAGCCGC
TGCTCCGCAAGGGCTCCCGCCAGCAGAAGCAGAGGCATTTGGAGGCCGCA
CCAGCACCACAGTCAGTCCCGCAGCCCGCCCCTCAGCCACAGATGCAATT
AATGCAGGAACATGCGCCGCAACAGCCCACTATGCAGCAGCAGATCCAGC
AGATTCATATGCCCACACTTCAGCCTGCTCCCGCCCAGCTACTGTCCGCT
GCCGGTGCCACCACGACTATGCCGCAGCAGATCCTGTTGCCCAACGGCCA
ATTGATAACGACTGCTCAGATTGTAGCGCCGCAGTTGGCGCAGATCATCA
GCACAGCGCCGCAGTCAACGACTAATGGTCAGGCCACCGCTGCGCAATCG
CAATTCCTGCCACAGCTTCTACAGACGCCGAACGGACAGACGTTGCAGAT
TGTTCAGCAGCCCAATGGCACGCAGACCCTGCAGCTGGTTCAACTTGTGC
CGCAACGCAGTTTGGCTCCGACCGGAGTCACGACAGTGACACAACTACCA
ACGCCACGGATATGGGTCAGCATGTAAGCGCTTCTCTCGTGATGCCGACG
TGCAGTTGCTGAGACGCTGTGAGTGAAGACGAGAACTGGAAATGGTGTAC
AACAACTGGAAAGCAAGCCAATCAAGCTTGAACTATTGAACCGGACGAAC
GAATCAGCGACGGGACTTCTTAAAGGACCCCTCGAGCACTCAAGTATGGA
TCACGGATCTCCCGCAGAGTGAAGCCGAACCGTAGATAACTCTCGCAGTA
TTGTGCA
FMO07446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10321-RB | 3322 | CG10321-RB | 327..1508 | 9..1173 | 5145 | 96.8 | Plus |
| CG10321-RA | 3322 | CG10321-RA | 327..1508 | 9..1173 | 5145 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21635404..21636408 | 9..1011 | 4910 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..7007 | 268..573 | 272 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2660 | 286..608 | 269 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6891 | 316..487 | 258 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6914 | 319..525 | 241 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2536 | 275..526 | 238 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2539 | 331..574 | 231 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6951 | 286..437 | 224 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6961 | 281..431 | 222 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6900 | 286..418 | 218 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1145 | 298..423 | 193 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6915 | 382..562 | 192 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6973 | 389..644 | 190 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6879 | 340..509 | 187 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2656 | 332..397 | 167 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2745..3011 | 339..601 | 166 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2998 | 368..617 | 153 | 55.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1133 | 351..423 | 149 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1606 | 354..442 | 139 | 61.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1142 | 379..453 | 115 | 65.3 | Plus |
FMO07446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:13:35 Download gff for
FMO07446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10321-RA | 333..1342 | 1..1011 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:05 Download gff for
FMO07446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10321-RA | 322..1331 | 1..1011 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:11 Download gff for
FMO07446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10321-RA | 322..1331 | 1..1011 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:11 Download gff for
FMO07446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21635399..21636408 | 1..1011 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:05 Download gff for
FMO07446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17522904..17523913 | 1..1011 | 99 | == | Plus |
