FMO07447.5prime Sequence
1224 bp (1034 high quality bases) assembled on 2008-10-22
> FMO07447.5prime
CAGTCGACATGTCATCCTCGCTGAAGACCAGCCAAAGTGGCGGCATGTAC
GTCAAGACGTCGTCGATTTCGGGTATTTCGTCGATTTCTGGCAAGGAGGC
GGCCAGTTGCTACGGCGGATTTATGTCGCCTCCGCTGAGTGCCAATATAA
CGGCCAATAATGGGGAGCGGGAAATGTTCCGTGTGCCGGGAGCCAAGGTG
GAAACGAATGAAAGTTACGCCTGCGGTGAGCTGCAGTTTCCGGACTTTTC
ACACCTCTGCTTTGCCGCCGAGACACCGAACTCCGTGTTCAGCGACTGTC
ACAACTATGCTGGCCAGGATCAGCAGCAGGATTCGGATCAGGATGACATT
GTCTGCGCAGCGGCGGAAAATACGGGCATGCCCTATCAGCAGGGACAGTA
CACGCAACTGAATCGCGAGGATATCTTCCGCTTCGAACCGGAGGACATAG
CGCGTCTGACTGGCGAGTCCGAACTGCCCGGCATGTTGCAACATCCACAG
ACGCCATATACCCCATATACCCCTTACACACCCTACACACCGTGCAGTGC
ACAGAATAGTCAGTATGCCGTGCAGCCGGCGAATGACTCCATTAATCTGG
ATATCGATTATTTTAATTACGACGAGATTAATTGCCAATCGAAAAACCAG
TCACCGTGCTCATCACCGCACCTCGACGCCTGGCTGAACTTCAATCTCGG
CGAGATTTCAGCGGCCGCATCATCGAGTGCCGCATCCCCGAAGTTGGGCA
ATGTGTTCGAGGAGCAGGTCAAAGAGGAGGCCTCGCCGGCGAAACTGCCA
TCGATGAACTCCACCTTCGGCACTCCCAAATGCATTCCCATGTGCGCCAG
CAACTACGAGGATTACGCGAATCTCTACCAACAGGGATCGGGGTATTCCA
CGGAGAACTACCACAACATTATGGCTCAGTCGTCGAGAAGCCCAATCGCG
AGCACAAGCCATCTGGACATCGATGAACTGATGAACTGATTGTTGGGCGA
GCAGCAGCAGTTCTTCAGCATCATCTGCAGCAGCAAACTTGCAGGAGCAG
CAGAGCAACTGCATCAGCCCATTGGGCAGAACAGCCAAACAGACTGCAAG
ACGATTCTGTTACACTATTCTAATCGGATGAGTTCATAAAGGCCGAGATT
CCCGACTGACTTAATTGACTGAACTTCACCTAGAGAGAGATGTACCCGTA
CATGGACCGTCTTGTCCCCTCACG
FMO07447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lmd-RB | 3197 | CG4677-RB | 263..1408 | 9..1147 | 5240 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23025375..23026451 | 1079..9 | 4930 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-28 20:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 1766..1810 | 274..229 | 110 | 73.9 | Minus |
FMO07447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:28 Download gff for
FMO07447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1329 | 9..1069 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:18 Download gff for
FMO07447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1329 | 9..1069 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:38 Download gff for
FMO07447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lmd-RB | 263..1329 | 9..1069 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:38 Download gff for
FMO07447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23025385..23026451 | 9..1069 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:18 Download gff for
FMO07447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18851107..18852173 | 9..1069 | 99 | | Minus |
