FMO07448.5prime Sequence
1203 bp (1034 high quality bases) assembled on 2008-10-22
> FMO07448.5prime
CAGTCGACATGAAGAGCTACAGCCAATTTAATTTAAACGCCGCCGCCCCG
CCCGCCATTGCCTACGAAACTACGGTTGTAAATCCCAACGGCTCACCCCT
CGATCCTCACCAGCAGCAGCAACAACAGAGCCAGGATATGCCGCACTTTG
GACTGCCCGGTCCGCAGCCGCCGTCGTCGCAGCAGCAGCAACAACAATTG
CAAGTGCACCACCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACA
GCAGCATCAACAACAAATGCAGATGTCCTTGCTGCCGGGTCCTTACCGGC
CACACATCGAGGAGAAGAAGCTCACGCGGGACGCCATGGAGAAGTACATG
CGCGAGCGCAACGACATGGTCATCGTTATCCTGCACGCCAAGGTGGCCCA
AAAGTCCTATGGCAATGAGAAGCGATTCTTTTGCCCACCGCCGTGCATTT
ATCTGTTCGGAAGTGGCTGGCGCCGGCGGTACGAGGAGATGTTGCAGCAG
GGCGAGGGCGAACAGGGAGCACAACTATGCGCGTTCATCGGTATCGGGAG
CAGTGACCAGGATATGCAGCAGCTGGATCTCAATGGCAAGCAGTACTGTG
CGGCCAAGACGCTCTTCATCTCGGACTCGGACAAGCGAAAACACTTTATG
CTGTCGGTGAAGATGTTTTACGGAAACGGTCATGACATTGGCGTTTTTAA
CTCGAAACGGATCAAGGTTATATCCAAGCCGTCCAAAAAGAAACAGTCGC
TAAAGAATGCCGATCTGTGCATAGCCAGCGGCACCAATGTAGCCCTGTTC
AATCGCCTGCGTTCCCAGACTGTCTCCACCCGTTAGCTTCACGTGGAGAA
CGGACACTTTCATGCGTCGTCAACACAATGGGGGAGCTTTTACGATACAC
CTGCTGGATGACATGAGTCCGAGTCGGAGGAGTTTCAGGTGCGCGATGGT
TACATTCATAACGAACCCACAGTCAAACTGGTGTGCTCGGTACGGGCATG
GCCCCTGCCCACGTCTGATCATCCGAAGTAAGACATGCGATGGGCCCTGC
CTGAAGCCGACGATTCCCATTCTCAGCTGCACAAATGGCCCATCTATTGA
AGAATCGATCGGATGTATTCTCTGTTGGCCGAGAAATCATAACGTTCAGG
CAACCGTGCCCTAGGACCTACACAGGAATGGTATCTAAGTACGGCTCGTT
GAT
FMO07448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(H)-RC | 2633 | CG3497-RC | 450..1569 | 9..1126 | 5055 | 97.3 | Plus |
| Su(H)-RA | 2950 | CG3497-RA | 450..1569 | 9..1126 | 5055 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15041093..15041789 | 391..1087 | 2950 | 96.4 | Plus |
| 2L | 23513712 | 2L | 15039937..15040322 | 9..394 | 1930 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6898 | 108..272 | 332 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2546 | 108..266 | 306 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6921 | 108..265 | 303 | 66.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2485 | 108..274 | 299 | 66.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2507 | 108..272 | 285 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6879 | 112..271 | 261 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6949 | 108..268 | 224 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2511..2665 | 108..253 | 214 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2832..2999 | 99..254 | 209 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2957 | 111..266 | 188 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6951 | 108..265 | 187 | 61.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1153 | 98..197 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6956 | 108..231 | 150 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..7028 | 108..264 | 148 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6905..7061 | 111..267 | 137 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1588 | 103..142 | 119 | 77.5 | Plus |
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3988..4068 | 123..42 | 118 | 65.1 | Minus |
FMO07448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:29 Download gff for
FMO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(H)-RA | 437..1566 | 1..1131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:43 Download gff for
FMO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(H)-RA | 445..1574 | 1..1131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:19 Download gff for
FMO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(H)-RA | 445..1574 | 1..1131 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:19 Download gff for
FMO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15039932..15040320 | 1..392 | 98 | -> | Plus |
| 2L | 15041095..15041809 | 393..1104 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:43 Download gff for
FMO07448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15039932..15040320 | 1..392 | 98 | -> | Plus |
| arm_2L | 15041095..15041809 | 393..1104 | 96 | <- | Plus |
