FMO07451.5prime Sequence
1237 bp (1066 high quality bases) assembled on 2008-10-22
> FMO07451.5prime
CAGTCGACATGAACAACCAACTGAATCCGGCCACCTACCGCAAGTTTAAC
AATCTGCTCAGTAGCGGAGCGGTCACTGTGACCGGTCCCAGCCAGCCGCG
AATCCTCAAGTCGACGCGTATGGTGGTACCCGGTGGTGGCGGAGGAGGAG
GTGCCTCTGCCGGAGGAGCCTCAGCCGTTGGCGGCGTAGCACAGCAGCAG
GCGGTCAACGATGCAGAGTCGGGTGGCGTGGGTATCGGCGGATTAGCCAC
GCGATGCTATATCTGCGATGACCGCTGCGAGCCACAGACTTCGCTAACCG
ATATGTGCACCACGCACACTTCCACCAAATTCCCCAACAAACTGGCCCAG
CTCGTGGGCGAGGGTTTCCTCGTGATTGTTTGCGGCGAGGATTACGTGTG
CTCACGCTGTACCAACCTGGTGAACTACTACGACCGCCTGGAAAACGATG
TGGAGCGCGTCAAGACGAACCTCATCAGTTTGCTTAACAAGAAGTATGCC
ATTAACGAGGATATGGGCCAGGAAGGCAGTCCGCCGCTCAAGATGCAGAA
AATGGTCGGCGGATCCGCCAATCGCTCGTTGGAGGAGAGTCCTAGTGCGG
ATTTGCTGCGTCCACGTAAACTCCTGCAGGGAAACCCAGTTGGCCAGTCC
AAGATCGCCCCAGGAACCACCCAGAGCAGCGTCCAAGGCACCCAGACAGT
CCAACGCAAGGCCACCAAGATTTATAAATGCACCTCGTGTGACTATAAAA
CCTCGGATATGCGGCTGTTCAACACGCATTATGAAACCTGCAAGCAGCAG
ACCTTCCAGTGCAAGACCTGCCGCAAAATCTTCCCGCACTTTGGGGCCAT
GAAGCAGCACATGGTGCGCGACCACAATACCGCCATGGATACACGTGTGC
CATGTGTCACATTAACTTCGTGAACGAGAACAGCCTGCGCAAGCACATGG
AGACGAATCACGCTACCATGTACTGGTGACCAGCACCACCACCATACCGC
ATCAGCTGCTCCCGTGGCTGCTGCTTGCAGCTGCCGCTGCACCTGCTGCC
AACGAAAATCTGGTTGAACTTCGCTTAACACATGCCAATCATGCAGTCAA
GTCACGGACAAAGGTTGTTTTTGAAGACAATGGCCAGACATGCCCCTTGT
TAACCTAGCCTTAGTGGCCCTGGTCTCATACGCTTTGAAGCCGTAGAGAC
CGTCGTCTACTTGGTGGCGCGCGAAGTGTCAACAGCA
FMO07451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pzg-RB | 3824 | CG7752-RB | 335..1500 | 5..1162 | 5270 | 97.6 | Plus |
| pzg-RA | 4093 | CG7752-RA | 335..1500 | 5..1162 | 5270 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21286433..21287067 | 5..639 | 3160 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21287125..21287576 | 637..1085 | 1940 | 97.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 577..643 | 386..320 | 110 | 62.7 | Minus |
FMO07451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:51 Download gff for
FMO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 369..1460 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:33 Download gff for
FMO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 333..1424 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:52 Download gff for
FMO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pzg-RA | 333..1424 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:52 Download gff for
FMO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21286431..21287067 | 1..639 | 99 | -> | Plus |
| 3L | 21287128..21287556 | 640..1066 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:33 Download gff for
FMO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21279531..21280167 | 1..639 | 99 | -> | Plus |
| arm_3L | 21280228..21280656 | 640..1066 | 98 | == | Plus |
