FMO07453.5prime Sequence
1243 bp (902 high quality bases) assembled on 2008-10-22
> FMO07453.5prime
CAGTCGACATGAATAGCACTAAAGTGCCGCCCGAGTGGAAGAGGCGTGTC
AAGTCGGAGTACATCAAAATCAGGCAGCAGAAGCGCTACAAACGTGCCGA
CGAGATCAAGGAGGCGTGGATAAGAAACTGGGACGAGCACAACCACAATG
TACAGGATCTGTACTGCGAGTCGAAGGTTTGGCAGGCTAAACCCTACGAT
CCGCCGCATGTGGACTGTGTGAAGCGGGCGGAGGTGACTAGCTACAATGG
CATTCCCAGCGGTCCGCAAAAGGTGCCCATTTGCGTGATCAACGCGGTCA
CTCCCATACCCACCATGTACACGTGGGCACCAACACAGCAGAACTTCATG
GTGGAGGATGAGACGGTGCTGCACAATATACCCTATATGGGCGACGAGGT
CCTCGATAAGGATGGCAAGTTCATAGAGGAACTGATCAAAAACTACGATG
GCAAGGTTCACGGCGACAAGGATCCCTCGTTCATGGACAATGCCATCTTC
GTAGAACTGGTGCACGCCCTTATGCGCTCCTACAGCAAGGAACTGGAGGA
AGCCGCTCCGGGTACAGCGACTGCCATTAAAACAGAGACGTTGGCGAAAT
CAAAACAGGGCGAAGATGATGGGGTAGTTGATGTTGACGCAGATGGTGAA
TCTCCCATGAAGCTTGAGAAAACCGACAGCAAAGGGGATCTGACTGAAGT
TGAGAAGAAGGAAACTGAAGAACCGCTGGAGACTGAAGATGCGGATGTTA
AGCCCGATGTGGAAGAAGTCAAGGACAAGCTGCCCTTCCCTGCGCCCATT
ATTTTTCAGGCCATCAGCGCTAACTTTCCAGACAGGGCACCGCGCAAGAG
CTCAAGAAAAGTACATTGAGCTTACGGAGCACTAGGATCCGGAGCGCCCA
CAGTGTGCACACCCAACAATGACGGCATCAATGACGAAAGCGTTTCCCGG
GAAGGGACTATGCACTCCTTTCACACGCTCTTCTGTCGTCATGCTTCAAA
TACGACTGCTTCCTGCACCGCTTGCAAGTACATGCTGGATCCAATCTTCC
ATAGCCTCCCTATCCGAACTGAGCATTTCGCGAAACTTGCAGCAACTCCT
GCCTACATGTGATCGATGGCATGAAGAGAAGCTGGCGGGCGAATACAGAC
CCCTCTCAATTGATCTCGGCATGGCCGTCCGAGGACGTTATGAACGCACC
GTCCAATTACACAAAGGAGCCTTTATTTCTGGGAAAGTGAACA
FMO07453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(z)-RB | 2464 | CG6502-RB | 119..1260 | 9..1142 | 5120 | 97.2 | Plus |
| E(z)-RA | 2650 | CG6502-RA | 305..1446 | 9..1142 | 5120 | 97.2 | Plus |
| E(z)-RC | 2479 | CG6502-RC | 119..1275 | 9..1142 | 4960 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10636852..10637578 | 855..130 | 3570 | 99.7 | Minus |
| 3L | 28110227 | 3L | 10637639..10637761 | 131..9 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 10636623..10636784 | 1020..861 | 590 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:45 has no hits.
FMO07453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:52 Download gff for
FMO07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(z)-RB | 111..1261 | 2..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:09 Download gff for
FMO07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(z)-RA | 298..1448 | 2..1145 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:30 Download gff for
FMO07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(z)-RA | 298..1448 | 2..1145 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:30 Download gff for
FMO07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10636623..10636784 | 861..1020 | 93 | <- | Minus |
| 3L | 10636846..10637577 | 131..860 | 99 | <- | Minus |
| 3L | 10637640..10637768 | 2..130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:09 Download gff for
FMO07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10629723..10629884 | 861..1020 | 93 | <- | Minus |
| arm_3L | 10629946..10630677 | 131..860 | 99 | <- | Minus |
| arm_3L | 10630740..10630868 | 2..130 | 96 | | Minus |
