FMO07454.5prime Sequence
1220 bp (527 high quality bases) assembled on 2008-10-22
> FMO07454.5prime
CAATCGACATGGAGATCACGGACGGCCATGCCCTCCTTTCGCCGCCGCCC
CCTTCGCACTCCCACTCCCACTCACCGTTCGACAGCAAGGATCACGTCAA
GGAGCTGGAGTTCTACAAGAATCTGGCGGCGAAGGCGGCCTCCCTGGCCA
ACCAGCACTCCCCGCCGCCCATGCCCCTGCCCCTTCCGCTGCCCATGCAG
ATCGATGGCGAGGAGGACGAGAACGAGGGCGAGGGCGAAGGAGAGGGCGA
GGCGGAGGAACAGTCGGCGGAGGTCATGCGGCTGCGGCGAGAGGAACAGG
CTCAGGCCAAGGCGTTTGCGGCCCATCTGAACGGAAATATGCAAGACATG
ATAAATTTGCAAAAATTACAAAATTTGGCCACGCTACAGCATCAGCAACA
GCAGCATCAGCAGCATCCGCATCCACATCATGGGCACCAGCACCACCATC
ACCATCCCGCCACGGCCGCCGCACTAGCAAGTCTTCAAGGATTACCCGCC
TCGGTGTTCAATTCTCCGTTGAACCTCAGCGTGGGCGGTGAACCCGTAGC
AACCACCGGACCATCGGTGGCACCCACCTCGCCCACCCACAATGGCGGCA
AGAGCAAGACCGCCAAGGGCGGCAGTTCCGGCAATGGCTCAGGCGGATCG
TCCGCCAACTCCGGCACCAGCTCCGCCCAACAGCAGCAGCAGCGGGATAA
TCCCAGCAGCAGCATCTCCCCGCACCACCCCCTGAGCGACTCCTCGCTGG
CCAATGTCCTGGCGGCGGCTCCGCCTCGCCCCCGCCCTCCTTGCAGGCCC
GCCGGCGAGCGCCCGATGCCCAGCTGATTCTTGCCTCCGGACAGCTGGTG
CAGGGCGTCCAGGGTGCCCAGCTGCTCATACCCACGGCCCAGGTTTGCCG
TGGAACGGTCCTGACGATTCCGGTGAGTCTACAGATCTCTCCCCGAACGG
TTTCTGCCCAACGCGTTCGTGGCCTTTGCCAGCTACCACCTACAGGTATA
CACATCAGCAGCAGCGTGACTTGCTACTGCTTCGCTGGCGGCACTTCACT
AGGCACTGACTAGGCCCAGTTTGCACGAACACCACCATTCGTTCATCCAT
ATTTGTTTTTCCACGGCTGCCAACGCTGACTAGGCTTGCATCTCGGAACT
TTGTGTCGGTCGCTCTCACACTACGCCAGCCGTACAATAAACTCACCCAG
GCTCCTCGCTCTCTGGGATG
FMO07454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdm3-RF | 5156 | CG42698-RF | 1448..2535 | 9..1083 | 4425 | 94.6 | Plus |
| pdm3-RE | 5099 | CG42698-RE | 1448..2535 | 9..1083 | 4425 | 94.6 | Plus |
| pdm3-RC | 5153 | CG42698-RC | 1448..2535 | 9..1083 | 4425 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8388949..8389504 | 340..891 | 2415 | 97.3 | Plus |
| 2R | 25286936 | 2R | 8387891..8388218 | 9..336 | 1640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:32:18 has no hits.
FMO07454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:54 Download gff for
FMO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm3-RB | 165..1166 | 1..994 | 96 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:39 Download gff for
FMO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm3-RC | 1441..2442 | 1..994 | 96 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:18 Download gff for
FMO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdm3-RC | 1441..2442 | 1..994 | 96 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:18 Download gff for
FMO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8387884..8388221 | 1..339 | 98 | -> | Plus |
| 2R | 8388949..8389506 | 340..892 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:39 Download gff for
FMO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4275389..4275726 | 1..339 | 98 | -> | Plus |
| arm_2R | 4276454..4277011 | 340..892 | 97 | -> | Plus |
