FMO07458.5prime Sequence
1182 bp (990 high quality bases) assembled on 2008-10-22
> FMO07458.5prime
CAGTCGACATGTCAGGGATCGGGGGCATTGGGGTGCTCCTCGAGGCGGCT
CAATTTCTTGAGCAGCATGAGAAGCTCCCGCAGGCGGGAGGCGGCGGCGG
TAGCGCCCTGGGCGTGGGCGTGGCACTGCCTCAACAGCAGCAGCAGACGG
TGCACTGCAAGAGCAACTCCATTATCAACAACAACAATAGCAGCCAGCAC
AATAGAAATAGCAGCAGTAGCAGTAACGGGATTATTGCAACGCCACCGTT
CACGAACGGAAATGGCAACGGTACCGTCGGCGTCGGTAACGCGAGCGCCA
TTTTCAACGTTAGCGTCAATGCGAACGGGAACGGTCTGAGCAACGGTCAC
AGCAGTCCGCGCAGTCAATTAGCCGCCGCAGCCACTGCCCACGATTACGA
GTATAGCGCCGCCGGAGTTGCCAATGGACACAGCGAAGGTCGCCCCCACG
TCTCGGCAGCCAGGGATCAGCAGGACCATCCGCAGCATCAGCAACATGCC
AACCATATGCAGATCCAGCAGCATTACGGCTATATGAGGAGTAACATTGG
CGGCGTGATCTATGGCTTGCACAAGGACTCTGCCGACTCTGCGGCATCCT
CGGCATGTGGAGCGGGAGCGGGAGCAGCAGCGGTGGGCATGAGCATTGCC
TCCTCGGCGCCAGCGGCGGGATCTCAGCTATCGGCGCATCATCACACGGG
ACACGGAGGCCGCAGGCGCACCACCAGTTCCAATAGTAATGGAGCGGGCA
CCCGGGAGGTGCACAACAAGCTGGAAAAGGAGCGACGCGCCCAGCTGAAG
GAGTGCTATGACCTGCTCAAAAAGGTGCTGCCCATGGGTGACGAGGACCG
AAAGAAAACATCAAACTTGACATACTTGACACGGCCCACAAATATGTCAT
TTCTTTGAGTCATGAGTTTGCGAGCAGAGCGAAGAAAGAGAAACTGGCCA
GCAGAGATCGAGCTGCAGAGCGGCTAAAGCACTGAGCTTAAGGAGGGAAT
CGCCGCCCACCGATCAGCAATCATCCACAGGCGACAAGCAGTTTGTCTGC
AACACAGCAAACAGCACCACCAACGGCGCAATGGCCAATGGACCCAATCT
AATCCATCCAGCAGCCTGTCCATTGGGCGCTAACTGTACTACATATGGAG
AACCGTAGCCAATCAACATGGCACCACAACGA
FMO07458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mnt-RE | 3242 | CG13316-RE | 563..1648 | 9..1078 | 4985 | 98.3 | Plus |
| Mnt-RJ | 3335 | CG13316-RJ | 653..1738 | 9..1078 | 4985 | 98.3 | Plus |
| Mnt-RA | 2440 | CG13316-RA | 653..1738 | 9..1078 | 4985 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3693485..3693932 | 9..456 | 2240 | 100 | Plus |
| X | 23542271 | X | 3698741..3699027 | 456..742 | 1435 | 100 | Plus |
| X | 23542271 | X | 3699113..3699271 | 742..899 | 745 | 99.4 | Plus |
| X | 23542271 | X | 3699342..3699464 | 905..1020 | 270 | 92.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2472 | 126..227 | 179 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2650 | 158..496 | 164 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2415..2512 | 126..222 | 163 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6912 | 290..523 | 150 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2982 | 132..344 | 148 | 56 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2104 | 132..226 | 136 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2442 | 464..554 | 115 | 59.8 | Plus |
FMO07458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:43 Download gff for
FMO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mnt-RA | 651..1754 | 9..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:23 Download gff for
FMO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mnt-RA | 653..1756 | 9..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:09 Download gff for
FMO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mnt-RA | 653..1756 | 9..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:09 Download gff for
FMO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3693485..3693932 | 9..456 | 100 | -> | Plus |
| X | 3698742..3699027 | 457..742 | 100 | -> | Plus |
| X | 3699114..3699273 | 743..901 | 98 | -> | Plus |
| X | 3699339..3699486 | 902..1038 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:23 Download gff for
FMO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3587518..3587965 | 9..456 | 100 | -> | Plus |
| arm_X | 3592775..3593060 | 457..742 | 100 | -> | Plus |
| arm_X | 3593147..3593306 | 743..901 | 98 | -> | Plus |
| arm_X | 3593372..3593519 | 902..1038 | 91 | -> | Plus |
