FMO07459.5prime Sequence
1211 bp (998 high quality bases) assembled on 2008-10-22
> FMO07459.5prime
CAGTCGACATGCTGACCATGGAATCGGATATGAAAGGCAGCCTGCTGCAT
GCCACCATGCCGCCGCATCACACAAGTGCCGCGTTGCACGGACATGCGGC
ATCGCCGTACTCCGCCCTAGCTCCCCTTATGAACCTGGGCCAGTCGCACC
TGACCCACTCGCAGCTGAGCCATCACAACCACCATCATCACCACATGAGC
GCCCATATCGCGGCCAGCCAGAGTCCCAATCCGCTGAGCTCGCTGCAGTC
CTCGATGGCGAACACCCTCAATGGCAGCCAGGTGGGGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGAGCTCCCCGCTGCACAGCTCCAGCGAATTGAGT
CCCACCCAGAGCAGCATCGGAAGCCATCACATGACATCGCCGGTCAGCCA
CCAGCAGCACACGCAACAGCAGCAGCACGGGCAGCAGCAGCATCTGGGCG
CGGGATCTGCATTGAGCAGCCTAACTGGAGGATCCAGCAACAACAACAAC
AACAGCGCCACGGCCAACAAGAACCAACAGCACGCGGATCGTGTGAAGCG
GCCTATGAATGCGTTCATGGTTTGGTCACGGGGCCAGCGGAGGAAGATGG
CCTCGGACAACCCCAAGATGCACAACTCGGAGATCTCGAAGCGACTGGGC
GCCCAGTGGAAGGACCTCTCGGAATCGGAGAAGCGACCGTTCATCGACGA
GGCCAAGCGCCTGAGGGCGGTGCACATGAAGGAGCATCCGGACTACAAGT
ACCGGCCGCGCCGCAAGACTAAAACGCTGACCAAGACCAAGGAGAAGTAC
CCAATGGGCGGCCTGATGCCCGGACAGACGGTGGGCGGCGGAGCACCGGG
TGAGCCGGTGACGCCCACGCGGGTGCAAGGTCAGCCTGGCCAGACCAGTC
GCTAAACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCGGCGGCGGCAGCAG
CGCAGCGCACAGGCGCCGCCAAGAAATTGTACCAAATGACGCGCCAATGA
TCTTGCCCAATGGCTACTGATGCAGCAAATCCGGCCGGAGCGCAGCCTAT
CAAACTTCTACATGGGCCAGACTAACGGCGCAACCGTACGACTTGGGACA
CAGTACAACAACGGTATGCATTAACGACGGTGTTCGGGGAAGACTCGCGT
ACGTCAGCTCCAGAGCCGGGATACCGCTCCGTAATGGGCGCATATTACTT
GCGACACACGA
FMO07459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SoxN-RB | 4026 | CG18024-RB | 850..2019 | 9..1158 | 5050 | 96.8 | Plus |
| SoxN-RA | 4026 | CG18024-RA | 850..2019 | 9..1158 | 5050 | 96.8 | Plus |
| D-RD | 2619 | CG5893-RD | 1633..1854 | 546..767 | 555 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8826494..8827438 | 9..952 | 4675 | 99.9 | Plus |
| 3L | 28110227 | 3L | 14176691..14176912 | 767..546 | 555 | 83.3 | Minus |
| 3L | 28110227 | 3L | 14106554..14106711 | 703..546 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:40:14 has no hits.
FMO07459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:11:45 Download gff for
FMO07459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 863..2010 | 1..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:25 Download gff for
FMO07459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 843..1990 | 1..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:20 Download gff for
FMO07459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SoxN-RA | 843..1990 | 1..1133 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:20 Download gff for
FMO07459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8826487..8827634 | 1..1133 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:25 Download gff for
FMO07459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8826487..8827634 | 1..1133 | 96 | | Plus |
