FMO07465.5prime Sequence
1191 bp (1032 high quality bases) assembled on 2008-10-22
> FMO07465.5prime
CAGTCGACATGGCGCTTTCGTTTCTATCCCAAAACTCCGGTCTGTTGGAT
TTACAAAGCATATTCGATCCACAATATACTCATCATCAACAACAACAACA
ACAACTACTACATTTGAGCCACCACCCTCAACATCACATTCAACAACACC
AAAATCAACAACTACAACAACAAGCGGAGCAAATTCAACAACATCAACAA
GAACGCACCCTTTCAACAAAGTTCGATTTGAACCTGTTCAACGAACTCGA
CCAAATGGAATTCAACAATTTAAATCGCAGTCAATATCAGAATAATAATA
ATAACAACAGTATCAGCAATAATCAAAACTCCAACAACAATACCAACACC
ACTAACGGTATCAGTGAAAATCTAAATCAGATCCAAAACCGCCACTTCAT
CAGCGGCTACCACCATCAGCATATTGGATCGGACTATGAGCAAGTGATCA
ACTTTGTTGACTCGCCGCCAAACTCAGAGGAATCGTGGACAGACGGACAG
TCGAAGGACTCGCCGGGACCGCAGATCATCGACGTGCAGACCATTTACCT
GAACAGCGGCTCACGCAAAAGACGAATGGATTGGGACTCTTTGGACATTG
GCCAAAGTGAGAACTCACCCACAGCATCGCAGAGCGGCGACTTGCCCTCC
AAAGTGGCCCATCAGGAGAAGGAAAAGCACAAGCGCGAGAAGCACTCGGG
TCGCAGCAGCTGGAGCGATGATATCGGCTTCGATCTGAACGCCGAGTTTA
ACAGCAACTCATATTTGAACAATGAGAACTTCCTGTCGTTCTCGCCCACG
CTGACCACCCTGAAGCAGAGCCCCAGACGGATCAGATCAAGCCGAGCCCA
AGGTATCCCTGGATAATGCCTCCGCATCGCCCTCCATCGCCATTGCCAAG
TTGGATGAGTCCAGACTCGCCGTCGCAGCTATTTCTGGCCAAGACTCGGC
TACGGATCGGGATCGGCGCAAACGGCAGCATGATGTAACTCCGACTCGCC
TGCGGTGTGCTCTCCTCAGTTCACCACTAGCCACGCCGAGTATGATTGAA
CGAAAGGAAAGCCCAGCACTTACGTTTGATCTGCTAATCGAGATCGTTCG
CCCACGAACTACCATGCCAGAATCCAAATTCGTACTGCCGCATGATCGCC
CAGAACTAGTGAACTTGAGAGTACTTCACCAGGGCGGAGCT
FMO07465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gem-RG | 4514 | CG30011-RG | 1295..2417 | 9..1104 | 4965 | 97.5 | Plus |
| gem-RA | 4930 | CG30011-RA | 1711..2833 | 9..1104 | 4965 | 97.5 | Plus |
| gem-RC | 6172 | CG30011-RC | 3435..4075 | 491..1104 | 2555 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10127206..10127577 | 9..380 | 1860 | 100 | Plus |
| 2R | 25286936 | 2R | 10128821..10129031 | 491..701 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 10131774..10132072 | 773..1055 | 730 | 94.6 | Plus |
| 2R | 25286936 | 2R | 10128578..10128692 | 378..492 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 10131621..10131694 | 699..772 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 283..328 | 122 | 73.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 283..328 | 122 | 73.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 11..95 | 265..355 | 118 | 61.5 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7049..7133 | 265..355 | 118 | 61.5 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2855..2908 | 263..316 | 117 | 68.5 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2749..2802 | 263..316 | 117 | 68.5 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 6208..6296 | 377..289 | 112 | 58.4 | Minus |
FMO07465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:06 Download gff for
FMO07465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 1851..2950 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:28 Download gff for
FMO07465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 2909..4008 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:22 Download gff for
FMO07465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 1701..2800 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:22 Download gff for
FMO07465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10127196..10127577 | 1..380 | 98 | -> | Plus |
| 2R | 10128581..10128692 | 381..492 | 100 | -> | Plus |
| 2R | 10128823..10129029 | 493..699 | 100 | -> | Plus |
| 2R | 10131622..10131694 | 700..772 | 100 | -> | Plus |
| 2R | 10131774..10132099 | 773..1077 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:28 Download gff for
FMO07465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6019127..6019199 | 700..772 | 100 | -> | Plus |
| arm_2R | 6014701..6015082 | 1..380 | 98 | -> | Plus |
| arm_2R | 6016086..6016197 | 381..492 | 100 | -> | Plus |
| arm_2R | 6016328..6016534 | 493..699 | 100 | -> | Plus |
| arm_2R | 6019279..6019604 | 773..1077 | 93 | | Plus |
