FMO07467.5prime Sequence
1223 bp (1036 high quality bases) assembled on 2008-10-22
> FMO07467.5prime
CAGTCGACATGGCTGCGGCCGGAAGCAACGTTCGCTGCATTAACTACTAC
GACCTGTGTCGCATCTGCACGGACAGCAGCGATCACAAGACGAACATCTA
CTCACCCGAGGGACGCGCCAAGAATCTGAGCCAAAAGATACTCGAGTGTC
TCTCACTGCAGATCGATGAAAAGGATCGCTTGCCCAAAGTGGTGTGCGCC
CAGTGTGTGCAGTTGGTGGAGCAAATCCACGGACTTCGCGCCACTTGCCG
TAACTCACAGACCATGCTAAACAACTGTCTCAATATTCGCCCGGCGCCAA
GCAGCGACAAGCTATACATTCGGGATGCGGTCGATGAAACTGGGAAGAGC
CTCAGTGTGGCGCAGTCAGCTCCACCAGTTCCTAATGGAGCTCAGCAGTC
CGGAAATCTCTTGAACAGCATAATCCAGGCGGTAAACATGCAGCCCCAGC
AGCAGTACACCATAACGATGGACAACGGGGTACAGCAGCAGCAGCAGCAG
CATCAAGCTATGCCGGAAGTTCAAATAAAAAGCGAAAGACAGACTGCTTT
GGAAGAGTTTATACGCCTCAAGCCTGACATCAAGATAACGCCGCTGGGGA
AAAAGGAGCCCATATCGCCTGCCAAGCCCCAGCAGCAACATTCTCTGCAG
TCCCAGACAGTAACGCCTACCATAAACCCTACTCAGTTGCAGTTACAACC
GCAGCTAGGCGATCAACTGCAGCCTTTGTGGCAGCAGATTCAACAACTTC
AGCTTCAGCAACAACTACAGCAACTGACCAACCAGCTGCAGGCTACCACA
CAGTACTCCGTCGCTCAGATGATACGTCAAGTTCTGGCGACAGTAAAAAG
CCAAAGTTGAACTTTGTGCTCTCTTCGCCTACAGCGCCCCAGTTCACCAC
TTCAATGCCGCAATTCGTGGCAGTCAGCCGCAAATACAGCTGCAGTTGAT
GCCAGGTAGCGGAGGAGTGACAGTGCAGGACAGTTCCTGCCCAGACGCAG
CTAATGCTGCTGCCCTGCTCTCAGCCTGGCGGGTCCGCATCAAAACCACC
TGCTGTCACAACATGCTTTCTGCCTATCACCATTCAGACAGAATCGGATC
AGCAGATCCTGGGGCCAAGACCAGGAGCTATGTGTTGCCCCGCACATCCC
AGTACGAGTATCTCAGCCTGACTGGCATTGCGATGCAGCCATCTATGGTC
ACGTGACCCACACCTCATTTCGG
FMO07467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pad-RB | 3276 | CG10309-RB | 77..1196 | 9..1112 | 5175 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16343044..16343544 | 545..1039 | 2205 | 98.8 | Plus |
| 3R | 32079331 | 3R | 16342601..16342988 | 157..544 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 16342394..16342550 | 9..165 | 770 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 20:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2522 | 625..801 | 192 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6897 | 629..800 | 162 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6915 | 630..790 | 158 | 60.6 | Plus |
FMO07467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:09 Download gff for
FMO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pad-RA | 77..1210 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:42 Download gff for
FMO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pad-RB | 77..1207 | 9..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:25 Download gff for
FMO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pad-RB | 77..1207 | 9..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:25 Download gff for
FMO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16342394..16342546 | 9..161 | 100 | -> | Plus |
| 3R | 16342606..16342988 | 162..544 | 100 | -> | Plus |
| 3R | 16343044..16343638 | 545..1121 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:42 Download gff for
FMO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12168116..12168268 | 9..161 | 100 | -> | Plus |
| arm_3R | 12168328..12168710 | 162..544 | 100 | -> | Plus |
| arm_3R | 12168766..12169360 | 545..1121 | 96 | | Plus |
