FMO07469.5prime Sequence
1267 bp (1058 high quality bases) assembled on 2008-10-22
> FMO07469.5prime
CCTATACGAAGTTATCAGTCGACATGCATACGGATATCATAATTGGTGAT
CAGTTTGCCGCCAACAATAACTACTGGGTGATGCAGTCCCCGGAACTAGA
CTATCGGCACGAGCTGATGGGTCGTCTGCATAAAATCGAGCCCGCCGATG
TTGAGCTTGAGGTTCTGGCAGCGGCCGCGGCAGCCGCAAACAACAACAAC
AACACCAGCAGCAATAACAACCACAGCAGCAACAGCAGCAGCAACAACAG
CAACGGCAGCCAAACACCAAACGGCAACAACAACAGCAGTTTGGCAACCG
GAGGCCATCAGCATCATCAGTTCCACCACCACCTGCACCACCACCACTCC
CATCAGCACCACCACCAGCACCATCATTTGCACCAGCATCATTCGCACAG
CCTTCAAAGTGGCGAAAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCG
CCCCCTCGTACGCCAGCGATGTTCCACATGCGCAGCAGCAGCAACTTCAG
CCCGCCGGATCGCCGAATTCCAACTCAAACGGAGCCTACGGCTGTGCACC
ACTCTACGATGGAGCGCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGG
TGGTTGCGTCAACGGGTGGTGCGACTTCCAGCGACAAGGAGTATTTATAT
GAAACCAAAAACAAAGAGGCTCTCTACGCCGATCCGCTGGACGATCCCTA
CCAGCGACCCGTGCTCTGGGATGATATTACTACCTCAATCCAAAATATCG
ATCCGGAGAACGCGCTCATGCTGAGCAGCAGCGGTAGCAGCAACAACAAC
GGCAGCAGCAACAGCAGCAGCAACACGGGCGAGTCTGCAACATCGCAGCT
GCCGCAGGTCAAGATGGAGGCGATCGATGAGAGCCTGCTCGAGACATTTT
CGACCCCATTGCTCAGTCCCCTGGAGATAAAGACCGAGAAACAGCAGCGA
CAACAGCAGCACCAGCACCAACAGCAGCAGCAACGCAGCAGCAGCAGCAG
CAGCAACACCAGCAACAACATTCAGCAACAATTACAGCAGCAAACCTATC
AGCAAATTTATCAGCAGCAGCACTTGTACCAGACACATCCCAGCCTTGGG
GCTGGCCTGGCCTTGCCCCCCCCTGTCCCAGTGGTAAGATTGGCAACGTG
CACGGCCAACATCTAACAGCAGCAAATCCTGGGAACAACACAGTTAACAC
ACGCTGCCTGAGGTTGGGGAACCCCGCGGGCAAAACAACGGGCAAACCCC
CTTCCCTCTCTATTACT
FMO07469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dar1-RB | 3526 | CG12029-RB | 731..1876 | 24..1175 | 5235 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3644639..3645206 | 84..651 | 2840 | 100 | Plus |
| 3L | 28110227 | 3L | 3645874..3646319 | 651..1096 | 2000 | 97.5 | Plus |
| 3L | 28110227 | 3L | 3627082..3627144 | 24..86 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:41 has no hits.
FMO07469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:36 Download gff for
FMO07469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12029-RB | 209..1309 | 24..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:49 Download gff for
FMO07469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dar1-RB | 731..1831 | 24..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:56 Download gff for
FMO07469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dar1-RB | 731..1831 | 24..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:56 Download gff for
FMO07469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3627082..3627144 | 24..86 | 100 | -> | Plus |
| 3L | 3644642..3645206 | 87..651 | 100 | -> | Plus |
| 3L | 3645875..3646305 | 652..1082 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:49 Download gff for
FMO07469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3627082..3627144 | 24..86 | 100 | -> | Plus |
| arm_3L | 3644642..3645206 | 87..651 | 100 | -> | Plus |
| arm_3L | 3645875..3646305 | 652..1082 | 98 | == | Plus |
