FMO07470.5prime Sequence
1208 bp (1016 high quality bases) assembled on 2008-10-22
> FMO07470.5prime
CAGTCGACATGGCCCAACCACAGCTGCTGCAAATCAAATTGTCACGTTTC
GATGCCCAACCCTGGGGATTCCGCCTTCAGGGGGGCACGGACTTCGCTCA
GCCCCTGCTGGTGCAAAAGGTGAACGCCGGCAGCTTGTCCGAGCAGGCTG
GCCTCCAGCCCGGCGATGCGGTGGTCAAGATCAATGACGTGGATGTCTTC
AATCTGCGTCACAAGGATGCCCAGGACATTGTGGTGCGCTCCGGCAACAA
CTTTGTCATCACAGTGCAGCGCGGTGGCTCCACCTGGCGCCCGCATGTGA
CACCGACTGGCAATGTGCCGCAGCCCAACTCGCCGTATCTGCAGACGGTG
ACGAAGACCTCTCTGGCTCACAAACAACAGGACAGCCAGCACATCGGCTG
TGGCTACAACAACGCGGCCCGTCCCTTCTCCAACGGCGGCGATGGCGGCG
TGAAGAGCATTGTCAATAAACAATACAACACCCCGGTTGGCATTTACAGC
GATGAATCTATTGCGGAAACACTCTCGGCCCAGGCGGAGGTTTTGGCTGG
CGGTGTGCTCGGCGTCAACTTCAAGAAGAACGAGAAGGAATACCAGGGCG
ATCGCTCCGAGGTTCTGAAGTTCCTGCGCGAGGAGGAGACCGGCCAGTCC
ACTCCAGAACCACACAGTCCCGCCAACTTCTACTGGACACAGAGCCACGC
AATCGGCGGCAACGAGCGACGCACTCCACTGCACCACCAGCACCAGCAGC
CTCAGCAGGATGAGCGGATTGGTGTACCATTGCAGTCAAATACACTGGCG
CCGGAGGCGACACACAGGCCCAGCTTGCCGGTGGCCCCGAAAGATAACGA
GGAGCAGCCAGACAGGATCAGCAGAGCAGCCCGATCCGCGCATCATTGTG
CTGCCCATCTGCCCCGGCCTCAGGGGCCCGAGTATAAAGCTGAAATGGAG
CTGCAGCCGCGGCCACTGGCCACCGACCAGGATGGACGACACGTTCATTG
GCCGCAAGCGACATCAGCCTGCAGCTGGGGCGGGCGTTGGCATGGTGGCG
GTTCGTGCGCCATCAGATAAAAACCTGGCACGTGGAGGCTCAAGGTTGCC
AGTGTGCACCCTCATGAAGAAACAGGCTACTAACTTCACAAAGCTATGCA
ATCAAGCAAGTCGCAATCAAATTCCCTCTAGGACGCAGAGGTCATCTTTC
GCGTCTTC
FMO07470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp52-RV | 3701 | CG37-RV | 206..1341 | 9..1132 | 4910 | 96.7 | Plus |
| Zasp52-RO | 1963 | CG37-RO | 206..1341 | 9..1132 | 4910 | 96.7 | Plus |
| Zasp52-RN | 4637 | CG37-RN | 206..1341 | 9..1132 | 4910 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15779302..15779661 | 1010..655 | 1445 | 97.2 | Minus |
| 2R | 25286936 | 2R | 15783088..15783245 | 428..271 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 15783315..15783468 | 271..118 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 15781773..15781906 | 562..429 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 15803359..15803471 | 121..9 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15780985..15781080 | 657..562 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:56 has no hits.
FMO07470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:39 Download gff for
FMO07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp-RE | 197..1227 | 2..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:31 Download gff for
FMO07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RN | 201..1231 | 2..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:40 Download gff for
FMO07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp52-RN | 201..1231 | 2..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:40 Download gff for
FMO07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15779323..15779658 | 658..990 | 97 | <- | Minus |
| 2R | 15780985..15781079 | 563..657 | 100 | <- | Minus |
| 2R | 15781773..15781906 | 429..562 | 100 | <- | Minus |
| 2R | 15783088..15783244 | 272..428 | 100 | <- | Minus |
| 2R | 15783315..15783466 | 120..271 | 100 | <- | Minus |
| 2R | 15803361..15803476 | 2..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:31 Download gff for
FMO07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11666828..11667163 | 658..990 | 97 | <- | Minus |
| arm_2R | 11668490..11668584 | 563..657 | 100 | <- | Minus |
| arm_2R | 11669278..11669411 | 429..562 | 100 | <- | Minus |
| arm_2R | 11670593..11670749 | 272..428 | 100 | <- | Minus |
| arm_2R | 11670820..11670971 | 120..271 | 100 | <- | Minus |
| arm_2R | 11690866..11690981 | 2..119 | 96 | | Minus |
