FMO07472.5prime Sequence
1171 bp (1033 high quality bases) assembled on 2008-10-22
> FMO07472.5prime
CAGTCGACATGTATGCGGATAATAAACGTGGCCTAGACAAGGTGACGGCA
GCAACCCCGCCCACCCACGCCCTCCAGCAGCAGCAGCAGCAACAACATCC
CCACCAGCAGCAGCAGCATCTGCAGCATGTCCTGCAACTGCAGCAGCAAC
AGCAGCAACACCTTCAGCAGCAGCAGCATCACTTGCAGCACCAGATGCAT
ACGCATCATAACTTCCAGCAGCATGAAACGTCGGCAACAGTGTCGCAGCA
GCAGCACATGCAACAGCAGCAGCCGCAGACGACACAACAGCAACATGCAA
CACAGCAACAGCAGCAGCAACAGCAACATACAGCCGGCATGTTTACAAGA
TTCGATGCAAACAAATCGACGAAGGGCGCCTCGAAGATGCGACGCGATCT
CATAAATGCGGAGATAGCCAATCTGAGGGATCTCCTGCCGCTGCCCCAAT
CGACGCGCCAGCGCCTCTCGCAACTGCAACTGATGGCCCTCGTTTGTGTC
TATGTGCGGAAAGCCAACTACTTCCAGCAAGTTTTTAAACGTCACAATGC
GATGCATCATCTCCATCATCAGACAGCAACACCAAATATTGGCTTCTCAA
AGGCACTCTCCGGCTTCTTGATGATGCTCACACAAAATGGCAAATTGCTT
TATATATCGGATAATGCAGCGGAGTACTTGGGCCATTCCATGGAGGATCT
GCTGATACACGGTGACTCCGTTTACGATATCATTGACAAACAGGATCACG
CAAACATCCAGGCCGAGCTGAATAGGAACGTGCCACCGCAGCCGGGTGGC
TCGAGTCAGCGAGCAGCGGTGGTGCCGGTGGTGCTGGCGGTGCCGGCGAC
TCACGTCCAGCAATGGAAGTGCCGCTGGTGCCGGTGGTGCTGGTGGCGCC
TCAGTCTCGAGGGCGAGCATCGCATGTTCTCTGTCGCATGATGTTAGCCG
CAATGCCGCGACGGCAAATGCGTTTCGGCGATCAGAAGTTGTCTTGTCAA
GGTCACTATTTGTCATCTGCGCTTTGCAGTCGCAACGAGCCGTCTTTTGC
ACTGCACTCCGAATGCATGCCCGAACAGGGAGGGTTGTACAAGGGTCCAC
ACGCTTACACATCATCAATGCCTGAAATGCTATATCGATAATTGCCGATT
CATTGGGCCATGAATAGGTGA
FMO07472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dys-RD | 3959 | CG32474-RD | 671..1780 | 5..1094 | 4900 | 97.2 | Plus |
| dys-RC | 4195 | CG32474-RC | 671..1780 | 5..1094 | 4900 | 97.2 | Plus |
| dys-RB | 3353 | CG32474-RB | 65..1174 | 5..1094 | 4900 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26096189..26096533 | 349..5 | 1650 | 98.6 | Minus |
| 3R | 32079331 | 3R | 26081892..26082192 | 988..692 | 1210 | 98 | Minus |
| 3R | 32079331 | 3R | 26088166..26088349 | 531..348 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 26084071..26084163 | 693..601 | 450 | 98.9 | Minus |
| 3R | 32079331 | 3R | 26085109..26085182 | 603..530 | 355 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:27 has no hits.
FMO07472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:38 Download gff for
FMO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dys-RC | 668..1743 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:24 Download gff for
FMO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dys-RB | 62..1137 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:50 Download gff for
FMO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dys-RB | 62..1137 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:50 Download gff for
FMO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26081892..26082191 | 693..988 | 98 | <- | Minus |
| 3R | 26084072..26084161 | 603..692 | 98 | <- | Minus |
| 3R | 26085110..26085180 | 532..602 | 98 | <- | Minus |
| 3R | 26088166..26088347 | 350..531 | 100 | <- | Minus |
| 3R | 26096189..26096536 | 1..349 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:24 Download gff for
FMO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21907614..21907913 | 693..988 | 98 | <- | Minus |
| arm_3R | 21909794..21909883 | 603..692 | 98 | <- | Minus |
| arm_3R | 21910832..21910902 | 532..602 | 98 | <- | Minus |
| arm_3R | 21913888..21914069 | 350..531 | 100 | <- | Minus |
| arm_3R | 21921911..21922258 | 1..349 | 97 | | Minus |
