FMO07473.5prime Sequence
1209 bp (1046 high quality bases) assembled on 2008-10-22
> FMO07473.5prime
CAGTCGACATGTCCGAGGAGCCCAAGCGACGCGAGTGGCCCTTCTTCACC
CTGATGGACGTGTACTTCAGCGACCAGGTTAACGATCCCTCACTACGTCT
CTTCTCGTCCACAAAGACGCTCAAGGAGACCCTGGACGACAGCGTCTTCG
AGGATGATCCAATTATCGCCTCGGCCATTGCGGCGGCCACCAGTGGCGCC
TACATGGACATTGATGAGCTCATCCGGCGACAGAAGGAGCGTGCCGCTCT
GGCCGCCGAGCGGAAATTGGCTGCCGCTGCCAGCGGAGGCACTGGTGACT
ACAAATTCGATCTGAAGCCCATGCTATCGAACAGCAAGTTTAACAGCAAC
AGCGAGATGGCCAAGCTATCAAAGAGCGTCGATGACCTCTCTATGCAGCA
GTACAAGATCAAGCAAGAGCTAATGCGCCAGCGGGAACAGGAGCAGCAGG
AGAACATGGTCAAGATCAAGCAGCACGTACGCCAGCAGCAGCAGCAGCAA
CACCAGCAGCAGCAGCAGCAACAACACCACCAGGCCCAGCAGCAGCAGCA
GCGATTTCTGGGCCACCAGCAGGCCATGTCGCAGCATCCACACCGTCTGT
CGTCCTCGTCGACGCCACCAGCTTTGCAGCACGCCCTGCAGCAGCAGCAA
CAGCACATGCTGCAGCAGCACCAGTTGCAGCAACAGCTGCAGCATCAGCA
GCAGCAGCAACACCAACAGCAATTGCAGCAGCAGCAGCAACAGCACCACC
AACTCGCTCATCCCCACCAGCCGCACACACCGCGCCCCAGTACGCCACCC
ACCACGGCGCAGCAGATCCACATCACGGCCACCCAGCACCAGGCCGCCCA
GCAGCAGCTCCATCAGCAGCAGCAGCAGCCGTCGCACAAGCAGCAGCAAT
CCTACGCCGATCCCACACCATCGATCAGTACCTGCTGTCGTGAACAACTT
CCATGGCAACATGTGCGCGGCTTCCACTCCCTGCAGAAGATGAGAAGATG
GTGGATGTCACATCGCAGCGGCGGCAGATATTCAAGCACACAACTGGTCC
TGTCCGTTTGCAATCCCTACTTCACAGATTCTTTTCTGGAGAACCCATCG
AGTCACCCATTCTGTCTGTATGGCGACTGTGGAGGCCAGTCAATGCGGTC
TGTCGTCTCGACTTATGTATCAGTGAAGGGTAATGCTCAGGATTGGAGAA
TTCCTGATG
FMO07473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6118-RD | 4502 | CG6118-RD | 807..1951 | 9..1142 | 5225 | 98 | Plus |
| CG6118-RC | 4505 | CG6118-RC | 807..1951 | 9..1142 | 5225 | 98 | Plus |
| CG6118-RB | 4038 | CG6118-RB | 340..1484 | 9..1142 | 5225 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15424001..15425010 | 1011..9 | 4770 | 99.3 | Minus |
| 3R | 32079331 | 3R | 15423821..15423883 | 1108..1046 | 195 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:12 has no hits.
FMO07473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:19 Download gff for
FMO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RC | 246..1417 | 1..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:49 Download gff for
FMO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 333..1504 | 1..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:24 Download gff for
FMO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6118-RB | 333..1504 | 1..1158 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:24 Download gff for
FMO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15423961..15425017 | 1..1046 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:49 Download gff for
FMO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11249683..11250739 | 1..1046 | 98 | | Minus |
