FMO07474.5prime Sequence
1247 bp (984 high quality bases) assembled on 2008-10-22
> FMO07474.5prime
CAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACTCCACGGAC
ACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTATCCGGACAA
GTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCTGGATGCAA
CTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCACCAAAAAA
TTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCCAACGAACT
TCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAACCGACTGTC
TGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGGAAGTCAAG
CTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACTATCACTTG
TTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAAAAAGTCGG
TGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGGAACCCAGA
AGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTTGAAGACGA
AGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAAGTGGAAAA
CAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGAGTTTTAAA
CGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAGCCAGAAAC
TCGATTATATGACTGCTCCCTTTGCATTCGCAAGTTCAGCCGCAGCGAAG
CCCTCGAAGCACACCTAAAAATTCACCGGAATTCAAAACGATCGGCCAAC
ATTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTCTGCAACCG
CATGGCTACAAGCTGATTGAGTGCATGATCTGTCAGAGCCAATACAACAG
ATTGCTGATCTGCGCGGCATTTGGAGGAGCACCCCGATAATTGTTAGCCT
GTGCCGTCGGCAAAAATGGAGGCCCCATGGAGCTGTAGAGCTTGTTTTTT
TCCCGATTCAAAGGACCCTCAGGTGAGGAGCAGTTAATCACTTGATTCGC
AGGATTCTAGGCGGCCGGGTATCTATCAGCGTTTCTAATTCGATACGGAA
CCATAGTGCCTACAAATTGATCTGGACACAGCTCGGAACGACGCGACCTG
GAACGGGAATATCCATGTAAACCGACAAAGGACTAGATCGGCTCTAGGTC
ACCTTAACGTGCAGACTGTGTCCACCAAAGTTTCCCGCCGTAAATAC
FMO07474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18476-RA | 2946 | CG18476-RA | 96..1242 | 4..1152 | 5060 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11677405..11677817 | 553..141 | 2065 | 100 | Minus |
| 3R | 32079331 | 3R | 11676778..11677349 | 1128..554 | 1945 | 93.4 | Minus |
| 3R | 32079331 | 3R | 11677885..11678021 | 140..4 | 670 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:32 has no hits.
FMO07474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:20 Download gff for
FMO07474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 89..1198 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:40 Download gff for
FMO07474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 92..1201 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:26 Download gff for
FMO07474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 92..1201 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:26 Download gff for
FMO07474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11676794..11677349 | 554..1113 | 95 | <- | Minus |
| 3R | 11677405..11677817 | 141..553 | 100 | <- | Minus |
| 3R | 11677885..11678020 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:40 Download gff for
FMO07474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7502516..7503071 | 554..1113 | 95 | <- | Minus |
| arm_3R | 7503127..7503539 | 141..553 | 100 | <- | Minus |
| arm_3R | 7503607..7503742 | 1..140 | 97 | | Minus |
