FMO07475.5prime Sequence
1209 bp (993 high quality bases) assembled on 2008-10-22
> FMO07475.5prime
CAGTCGACATGAACGAGGGCAGGCAGTACTCGATCCACAGCCTGTGCAGG
ATCTGTCTGAACCACCTGCAGAACGACGCCGCCTACGATTTGTATCTGGT
TCCAGGACTTTCGAAGAAGCTATGCTTCTGCACATCCCTGTCCGTGGAGC
AAAACGACGGATTCCCGAAGAACCTGTGCACCCTGTGCTACACCAAGCTG
AACGAGCTGCACGACTTTCAGAAACAGTGCGTCGATTCCGTGCAAAAGTT
CCAGGATCTGGTGGCCAGCAATGTCTTTGCCTGCCAGAGCAGCTTCGACG
TCTTCGATCCCAACGTTGCCGTGCAGGACTACCCGGCCGAGGAAGAGGAC
CACGTCAACTATGACCCGCTGCTGAACCACAAGATGGAGCTAATCGAGAA
CGAGGAGGATGTCTTCAAGATGCTGGAGCACGTCGACAAGGAGGCCGAGG
AGGTGGAGAAGGAGGCCAAGGTGGAGGAGGATGACGGGGGCAACGTTTCC
GTCAAGATGTTCGACGACGATTCGTCCATCGAGAGCGGCAATGACAACGA
CCACGATCTGGACTTCGAGCCAAATAGCAGCGATGATGACATTCCGCTGG
CCCAGCGCATGAGGGGACCAGCTACCGGATCAGGACCCCAGCAGGACCGT
TTTAGCAACCTAGACAAACCCAAGCCGAGGCCCCGGGGGACGGCCCAAAA
AGATAAAACCGCCTCCGCCAGAGGAGGAGGAGTTGAGCGACTCATCCTCC
GAATCAGATGACTCCGAAGACGGCACATCGCGGGGCGACAAGCCGAAGAG
GAAGCGCATTCCCATCGAGGAACGCCACCTGCACCGCATCATCGACTGCC
ACATTTGCCACCAGAAGTTCAGAAGCCATCCGCTACGAGGAGCACATGAA
GTACACAACGACCTGCTGCCCTTCCAATGCAATGTGAAGACCTGCAAGAA
AGTTTCACTAACGCCAATGGCTGCGCATTCCATCGACCACGCCCACCATA
GCTGTCCGAGTTCCAGCCTGCATCGCGAGGCTGCGCAGGACTTCCCGCGC
GTCGTCTGCTACCTTCCAATGAAAAAGGACACGGATCCAAGGCGCTGCCC
GCTTCGAATTTCCCTGCTATGCCAACCGGAATTCCCGTCCTAGGCTCAGT
CAGATTAGACCACGGCAGAAGACTTCGCATACCTGTCAAATCTGCGCGAC
AGCGTGAGT
FMO07475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19A-RA | 3233 | CG10269-RA | 145..1271 | 9..1114 | 4940 | 97.2 | Plus |
| D19B-RA | 2685 | CG10270-RA | 228..575 | 117..464 | 690 | 80.2 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 846..1118 | 820..1077 | 465 | 81.7 | Plus |
| D19B-RA | 2685 | CG10270-RA | 867..969 | 832..931 | 290 | 87.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6188034..6188979 | 952..9 | 4510 | 99.2 | Minus |
| 3L | 28110227 | 3L | 6184346..6184693 | 464..117 | 690 | 79.9 | Minus |
| 3L | 28110227 | 3L | 6180849..6180984 | 952..820 | 370 | 88.2 | Minus |
| 3L | 28110227 | 3L | 6181274..6181382 | 463..355 | 350 | 88.1 | Minus |
| 3L | 28110227 | 3L | 6181477..6181641 | 278..114 | 225 | 75.8 | Minus |
| 3L | 28110227 | 3L | 6189945..6190016 | 146..217 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:17 has no hits.
FMO07475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:22 Download gff for
FMO07475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19A-RA | 116..1213 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:28 Download gff for
FMO07475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19A-RA | 138..1235 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:28 Download gff for
FMO07475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19A-RA | 138..1235 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:28 Download gff for
FMO07475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6188034..6188985 | 1..952 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:28 Download gff for
FMO07475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6181134..6182085 | 1..952 | 98 | | Minus |
