FMO07476.5prime Sequence
1230 bp (1025 high quality bases) assembled on 2008-10-22
> FMO07476.5prime
CAGTCGACATGTCGGAAAACGCGAAAAACAATAGCTGCCTGCATTGCAGC
GTATTCAGTACGAAATACCAGTACCAGGAGATCTTCGATGAGTTTGGAAT
CGAACTGGGACTGCAGTCCCTGCTGTCCAGGCATTACCAGCTCGAAGTGT
CGCCCGATCCGCAGAAGCAGCAACTCCTGTGCGAAGTGTGTGTCACCAAT
CTCATTCGCCTCTTTGACATCGATGAACTGGAAAGAGAACGGGAAGCTGC
GAAGGATGCGGCCCAGGGCAAAGATTCCAAGGCAGAGGAGGACCCCATTA
TTATTACCGAGGTCCAGGCAACTCCACCAGCTGCGAAACCAGCCAAGAAA
ACAGTGCCTTCAAGGCCCCTGACTAAGGTTCTGCGACCAGTGCCCATTAT
TCCCACCCGGGAACCGAGTGCCCGGATAAGGAATAGAGCGGCTGCTGCTT
CCAATGTAACGCCTGATACATCTAGATCTCCAGAGCCACCAGAGACGCCT
TCCACCGAAGATGCTGTTTCCAAAAGTGAGCCAAAACTGGTTTCTAAAGT
AGCAGATCAGGAACATTTTAGTGTGCTTATACAAAATATTCTGGACGAAG
AGGAAGCTGTTGTTGAGGATGAGACCGCAGTGAAAGAGGAGTCCAGTGAA
GCTGTCCAGGTCACAGAGGAAACAGAAGCCCCTGGCCAAATAGTCATCCT
AAACAGCGAGGCTGTGACAGACACCAATCCGGATGAGAATGTTTACATAT
ACGAGCATGAGGATGTTATGGATCCAAATTTGGACAATGTTAACGTAAAA
CCCATAAGTTGTTCGTCTAGATTGGTAGCTCAAGCTGAGGAAAGTCAAAG
CGATGATGACATCGACGAGGGAGAGACTAGCAATGTTGTTCTGTTTAACT
TTGTGGACATCAAGAGAACGATGAAGTTGATATATTTCAGGAGTACTTGG
CACCGTGATGAAGACGAGCTTTGAAAAGCTGACATTTCAGTGGATGCACT
GGGGTGCAAGCACTGCTCTTTTGAAATGTCCCCATTCGAGAGCCTTTTTA
GTCACTTGTCAAGCAACCAAGCCGGAAAGAATTTCTACGAGTGTTCCCAT
CGAGGATGCACAGGGGTTGAAGTCATCCTAGCATGCATCTTGTTTTGGGT
GCACCTCATGCTGAATCCCGATTTCACGCGAACCGGTCCGAAGTAAATGA
GCCGTTCTTCCACCAATCTCTGCTGCAGTA
FMO07476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18011-RA | 3329 | CG18011-RA | 48..1199 | 9..1147 | 5065 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10142385..10143138 | 9..762 | 3770 | 100 | Plus |
| 2R | 25286936 | 2R | 10143192..10143343 | 762..913 | 745 | 99.3 | Plus |
| 2R | 25286936 | 2R | 10143411..10143552 | 920..1062 | 370 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:40:22 has no hits.
FMO07476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:23 Download gff for
FMO07476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18011-RA | 46..1099 | 9..1062 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:29 Download gff for
FMO07476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18011-RA | 48..1101 | 9..1062 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:24 Download gff for
FMO07476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18011-RA | 48..1101 | 9..1062 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:24 Download gff for
FMO07476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10142385..10143138 | 9..762 | 100 | -> | Plus |
| 2R | 10143193..10143348 | 763..917 | 98 | -> | Plus |
| 2R | 10143409..10143552 | 918..1062 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:29 Download gff for
FMO07476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6030914..6031057 | 918..1062 | 91 | == | Plus |
| arm_2R | 6029890..6030643 | 9..762 | 100 | -> | Plus |
| arm_2R | 6030698..6030853 | 763..917 | 98 | -> | Plus |
