FMO07478.5prime Sequence
1219 bp (1033 high quality bases) assembled on 2008-10-22
> FMO07478.5prime
CAGTCGACATGGAGACGCTGCCATGTGCCAACCAGCTGCAGGAGCACCAG
CAGCCGCAGCAGCAGCACGTGAATCTCAGCATAGATCCTAGTCTGGGTGA
GAATGTGGTCAGCATTCCCAAGGAGCTGATCCTCATTTCGCTGGTCTCCC
AGGAGCAGTCGCTATACAATCCCAAGCATCCCCACTACCGCAGCACCAAG
ATCAAGGACGAGAAATGGCTGGAGATTGGCAGCAATGTGGGTTGGTCCGA
CGTCCAGTGCAAGTCCAAGTGGAAGGCCATGAGGGATCAGTACTGCCGGG
AGCTGAAGCGCGCCAAGGCCTGCTCAAAAGCAGTGAAGTGGAAGTATTTC
AAAGAGCTGGATTTCCTGCGTCCATATGCGCTGGCAAGAAATTACAGAGG
GAGATCTGGTCAGACTTCCAATGGCGCCGTGGGTACGGTGACCCCCTTAT
CGCTGCCCATGACTACTTCCTTCAGCAGCAACAGCAGTAGCCAGAATCTA
AACCTTTCCGGCAGCATTAAAATTGAGGATGCCAGTGCATCCACGCTGCT
CGACAGCTGCAGCTTCAGTTCGCCTAGTTCAACTGATAAGAAGCCGGCAG
CCACTTTCTTGGCAAGCCATATTGGAGCCGTGCTGCAGCAGCAGCAGCAG
CAACAGCAGCATCAGCAACAAATGCACTCGCAGCCGGAAGCGAACTGGAA
CTATCTGACGGATGCGGGAGGCGGTGCTACTCCATCAATCATAGTGCAGT
GTGGAACCGCCAACACAACCACGGTGGTAGACACTCTCTACAACGAAATA
GTGGACTGCGTCAATGCCGCCAATCAGTCGAGCTCGGCAGCAACAATCAC
GTCTAATGTATCCACCACTTCAGCAGCGCACAATCAATCGACGAACGCCG
AGGAGGAGACGACGATCCCATACACACATTTCTCACATGGAGAGCTACTT
CGAAAAGGACTGATCACGCTGATCAGCAGGAGACATGATCTACACTACGG
CACGAGACTATCGCATGCCAAGCTCAGATGGAGGTGTGGGGAGGAAATCC
GCCAAAAACTAAAGAGGTCGGTGAAACATGTCGACTGAAGTGAAGCTTAA
GACAATACGCCACGGTAACAAGCGATGAGGACCTGAGTGCCACATAATGC
AATCCGTTGGAACTTATTGCCTAGTCTTCGAAGTTCATACACCAGGACCC
GTAAGCAGAATTGCCAACT
FMO07478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8765-RA | 3082 | CG8765-RA | 118..1212 | 8..1092 | 5120 | 98.6 | Plus |
CG8765-RC | 3076 | CG8765-RC | 118..1206 | 8..1092 | 5020 | 98.1 | Plus |
CG8765-RB | 3020 | CG8765-RB | 206..1150 | 158..1092 | 4370 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19685958..19686646 | 1071..392 | 2825 | 97.7 | Minus |
3L | 28110227 | 3L | 19686995..19687236 | 249..8 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 19686795..19686937 | 391..249 | 715 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2375 | 28..82 | 120 | 72.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1146 | 11..67 | 114 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6765 | 31..67 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6786 | 31..67 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6807 | 31..67 | 113 | 78.4 | Plus |
FMO07478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:24 Download gff for
FMO07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8765-RA | 117..1229 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:32 Download gff for
FMO07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8765-RA | 112..1224 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:25 Download gff for
FMO07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8765-RA | 112..1224 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:25 Download gff for
FMO07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19685946..19686646 | 392..1088 | 96 | <- | Minus |
3L | 19686795..19686936 | 250..391 | 100 | <- | Minus |
3L | 19686995..19687241 | 1..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:32 Download gff for
FMO07478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19679895..19680036 | 250..391 | 100 | <- | Minus |
arm_3L | 19679046..19679746 | 392..1088 | 96 | <- | Minus |
arm_3L | 19680095..19680341 | 1..249 | 98 | | Minus |