Clone FMO07478 Report

Search the DGRC for FMO07478

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:74
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8765-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07478.5prime Sequence

1219 bp (1033 high quality bases) assembled on 2008-10-22

> FMO07478.5prime
CAGTCGACATGGAGACGCTGCCATGTGCCAACCAGCTGCAGGAGCACCAG
CAGCCGCAGCAGCAGCACGTGAATCTCAGCATAGATCCTAGTCTGGGTGA
GAATGTGGTCAGCATTCCCAAGGAGCTGATCCTCATTTCGCTGGTCTCCC
AGGAGCAGTCGCTATACAATCCCAAGCATCCCCACTACCGCAGCACCAAG
ATCAAGGACGAGAAATGGCTGGAGATTGGCAGCAATGTGGGTTGGTCCGA
CGTCCAGTGCAAGTCCAAGTGGAAGGCCATGAGGGATCAGTACTGCCGGG
AGCTGAAGCGCGCCAAGGCCTGCTCAAAAGCAGTGAAGTGGAAGTATTTC
AAAGAGCTGGATTTCCTGCGTCCATATGCGCTGGCAAGAAATTACAGAGG
GAGATCTGGTCAGACTTCCAATGGCGCCGTGGGTACGGTGACCCCCTTAT
CGCTGCCCATGACTACTTCCTTCAGCAGCAACAGCAGTAGCCAGAATCTA
AACCTTTCCGGCAGCATTAAAATTGAGGATGCCAGTGCATCCACGCTGCT
CGACAGCTGCAGCTTCAGTTCGCCTAGTTCAACTGATAAGAAGCCGGCAG
CCACTTTCTTGGCAAGCCATATTGGAGCCGTGCTGCAGCAGCAGCAGCAG
CAACAGCAGCATCAGCAACAAATGCACTCGCAGCCGGAAGCGAACTGGAA
CTATCTGACGGATGCGGGAGGCGGTGCTACTCCATCAATCATAGTGCAGT
GTGGAACCGCCAACACAACCACGGTGGTAGACACTCTCTACAACGAAATA
GTGGACTGCGTCAATGCCGCCAATCAGTCGAGCTCGGCAGCAACAATCAC
GTCTAATGTATCCACCACTTCAGCAGCGCACAATCAATCGACGAACGCCG
AGGAGGAGACGACGATCCCATACACACATTTCTCACATGGAGAGCTACTT
CGAAAAGGACTGATCACGCTGATCAGCAGGAGACATGATCTACACTACGG
CACGAGACTATCGCATGCCAAGCTCAGATGGAGGTGTGGGGAGGAAATCC
GCCAAAAACTAAAGAGGTCGGTGAAACATGTCGACTGAAGTGAAGCTTAA
GACAATACGCCACGGTAACAAGCGATGAGGACCTGAGTGCCACATAATGC
AATCCGTTGGAACTTATTGCCTAGTCTTCGAAGTTCATACACCAGGACCC
GTAAGCAGAATTGCCAACT

FMO07478.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8765-RA 3082 CG8765-RA 118..1212 8..1092 5120 98.6 Plus
CG8765-RC 3076 CG8765-RC 118..1206 8..1092 5020 98.1 Plus
CG8765-RB 3020 CG8765-RB 206..1150 158..1092 4370 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19685958..19686646 1071..392 2825 97.7 Minus
3L 28110227 3L 19686995..19687236 249..8 1210 100 Minus
3L 28110227 3L 19686795..19686937 391..249 715 100 Minus
Blast to na_te.dros performed 2014-11-28 21:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2375 28..82 120 72.4 Plus
roo 9092 roo DM_ROO 9092bp 1090..1146 11..67 114 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6765 31..67 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6786 31..67 113 78.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6807 31..67 113 78.4 Plus

FMO07478.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:24 Download gff for FMO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8765-RA 117..1229 1..1101 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:32 Download gff for FMO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8765-RA 112..1224 1..1101 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:25 Download gff for FMO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8765-RA 112..1224 1..1101 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:25 Download gff for FMO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19685946..19686646 392..1088 96 <- Minus
3L 19686795..19686936 250..391 100 <- Minus
3L 19686995..19687241 1..249 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:32 Download gff for FMO07478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19679895..19680036 250..391 100 <- Minus
arm_3L 19679046..19679746 392..1088 96 <- Minus
arm_3L 19680095..19680341 1..249 98   Minus