FMO07479.5prime Sequence
1234 bp (1017 high quality bases) assembled on 2008-10-22
> FMO07479.5prime
CAGTCGACATGACACCATCGCCGACCAAGGAACTCATGAGTGCCACACCG
ACGATTTCGCGTCGTCCGCGCGAGGAGTTCGCCGAGAAGGGTGCCATTAT
AAGAGAGGTGGAAGATGGAGTACGGTGTGAGCAATGTAAATCAGATTGCC
CAGGCTTTGCAGCGCACGATTGGAGGAAAACCTGCCAGTCCTGCAAATGT
CCTCGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAACGTGCATGA
GCGACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGTGGAGGCGC
GGGATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCTCCTCGCGC
ATCAACCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCCCGGCTGGG
CAGCGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCAGCTGCCCA
AACAGGACCTCTCGCTGGAGCACTGCAAGCACCTGGAGGTGCAGCACGAG
GCTTCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCACTGGACAT
AGCCTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCACTGTGATA
ACGAGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCAAGTTTGTGGAG
AGCGTGATGTGGCACCCAAAGTGCTTCACCTGCAGCACCTGCAACTCGCT
ACTCGTGGACCTCACCTACTGCGTCCACGACGACAAGGTCTACTGCGAGC
GCCACTATGCGGAAATGCTGAAGCCCCGCTGCGCTGGCTGTGATGAGTTA
ATTTTCAGTGGCGAGTACACAAAAGCCATGGACAAGGACTGGCACTCCGG
ACACTTCTGCTGCTGGCAATGCGACGAGAGCCTCACCGGACAGCGTTACG
TCATCCGGGACGATCATCCGTACTGCATCAAGTGCTACGAGAATGTGTTC
GCCATACGTGCGAGGAGTGCAACAGATCATTGGCATCGACTCAAGATCTG
TCCTAAAAGAACAAGCCACTGCACGAGCCTGTTTCCTGTGCTTCAGGTGC
CATCTGTCGCTGGGGACAAGCAGTTGGGCCAAGCGAAAAAATCCAATGGA
ACTGCTCAATGCCCAGTTGCGCTCCCCGTGCAATGGCTGCGGCTATTCCG
CAGCCACAGAAATGGATTAAACCGCAATGGACCAGAATGCTTCGGCGTGC
GTTCGGACACGGCCAATTGGGAACCACAGTCCTA
FMO07479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lmpt-RM | 2905 | CG42679-RM | 333..1481 | 9..1143 | 5135 | 97.5 | Plus |
| Lmpt-RB | 2916 | CG32171-RB | 344..1492 | 9..1143 | 5135 | 97.5 | Plus |
| Lmpt-RG | 3028 | CG32171-RG | 456..1604 | 9..1143 | 5135 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16896802..16897180 | 174..552 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 16897380..16897628 | 549..797 | 1245 | 100 | Plus |
| 3L | 28110227 | 3L | 16912127..16912325 | 796..992 | 895 | 99 | Plus |
| 3L | 28110227 | 3L | 16883917..16884005 | 88..176 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 16866866..16866947 | 9..90 | 410 | 100 | Plus |
| 3L | 28110227 | 3L | 16913224..16913306 | 995..1075 | 195 | 88 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:59:53 has no hits.
FMO07479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:20:34 Download gff for
FMO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RB | 335..1429 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:30 Download gff for
FMO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RG | 452..1546 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:22 Download gff for
FMO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lmpt-RG | 452..1546 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:22 Download gff for
FMO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16866862..16866946 | 1..89 | 95 | -> | Plus |
| 3L | 16883919..16884004 | 90..175 | 100 | -> | Plus |
| 3L | 16896804..16897180 | 176..552 | 100 | -> | Plus |
| 3L | 16897384..16897628 | 553..797 | 100 | -> | Plus |
| 3L | 16912129..16912329 | 798..994 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:30 Download gff for
FMO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16859962..16860046 | 1..89 | 95 | -> | Plus |
| arm_3L | 16877019..16877104 | 90..175 | 100 | -> | Plus |
| arm_3L | 16889904..16890280 | 176..552 | 100 | -> | Plus |
| arm_3L | 16890484..16890728 | 553..797 | 100 | -> | Plus |
| arm_3L | 16905229..16905429 | 798..994 | 98 | -> | Plus |
