FMO07480.5prime Sequence
1208 bp (1007 high quality bases) assembled on 2008-10-22
> FMO07480.5prime
CAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGAACAGTTTC
TCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCGGATCTACT
GGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGCCCACAAAC
TTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTGAGAACACG
CCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACGCCGGACAA
CATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCACGTCTCCC
AGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGCAGGTCAAA
GGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCACAACAACA
CATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCGGAGCGTAA
GGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCGGAGTCGGA
ATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCCGGCATGGG
CATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGGAGGAATGG
CGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAGCGGCCAGC
GCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATAATCAGCGG
ATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGGTAATGGCA
GCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTGGCGGCAAC
AATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCACCATCTGGG
CGGATCCACTGGCATCTTGAAGCAGAATGCGACTCCCTGATGCATCCGGG
TGGCAGTAGTTCCTCTTCCGAATGAACTACACCCATGTGCCGCCCATCTA
CCGACTATTAACTACGAACCTCCGCGCAGAGGCTATAGTCCGCAGTCCGT
AATTCCGAGCAAGAACAGCGCGGTTCGTCCTGCTAATGGCTCCAGTCCTC
CGAGTGACAGCCCATTCACAAGCGCGATACACGTCCTTGTCAGGCTCCTC
CAGGCCCCGAGGGGCACCATGACTCGAAGCGCCATTGCCCAGTTCCATGC
TAGAACATTCGAATACACGAATGAATGCTCAAGTCTGTGAGGCATTGTTA
TTTCCAGC
FMO07480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chinmo-RG | 6089 | CG31666-RG | 1806..2861 | 8..1056 | 4940 | 98.4 | Plus |
| chinmo-RF | 5037 | CG31666-RF | 754..1809 | 8..1056 | 4940 | 98.4 | Plus |
| chinmo-RE | 6320 | CG31666-RE | 2037..3092 | 8..1056 | 4940 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1694542..1695232 | 340..1026 | 3060 | 97.8 | Plus |
| 2L | 23513712 | 2L | 1694223..1694443 | 126..346 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 1690637..1690756 | 8..127 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:38:33 has no hits.
FMO07480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:28 Download gff for
FMO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chinmo-RB | 747..1823 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:24 Download gff for
FMO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chinmo-RE | 2030..3106 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:59 Download gff for
FMO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chinmo-RE | 2030..3106 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:59 Download gff for
FMO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1690630..1690755 | 1..126 | 96 | -> | Plus |
| 2L | 1694224..1694441 | 127..344 | 100 | -> | Plus |
| 2L | 1694547..1695279 | 345..1068 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:24 Download gff for
FMO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1690630..1690755 | 1..126 | 96 | -> | Plus |
| arm_2L | 1694224..1694441 | 127..344 | 100 | -> | Plus |
| arm_2L | 1694547..1695279 | 345..1068 | 97 | | Plus |
