FMO07481.5prime Sequence
1216 bp (1024 high quality bases) assembled on 2008-10-22
> FMO07481.5prime
CAGTCGACATGGGTTTTCCGCGCATCCTCAGCAAGAACAACAAGATCTAC
ACCAAGCTGGGCGAGTTCTGTTTGTCGGGGGATAGCTTCTGGATTGTTTG
TCACACGTGCCAAGAGGAGTTGCAGACACAGGATCAGTTCTGGAAGCACA
TACAGGATGAGCATAATTTCATGCACGGGGTGGCAAAGGAACACAGTCGT
ACATCCAGCTACTGCCTAACGGATGTGGAGGCTGCGGCGGCAGCAGCAAC
GCCAGGAAGCAGCTCCCAGCAAGGCGCCACAGCGATCAGTGTGCCTCTGG
CACTTTACACCTGCTCAACCAAGTATTCTGAGGAGGAGCAGCGGGAGGTG
GAAATGCACGAACAGCAGGTGCAACACCAAGTGCAACAGCAGCAAGCGCA
GCAGCAGCAAGCGCAGCAGCAACAACACCAACAGTCTCAGCAGCAAGGGC
ACCAGCAACACCAGGTTCAACAACAGCAGACCCACCAGCAGCTCCAACAG
CAGCGGGATGTTGCCAAGGAGCTGGCTGAACTCCATGCCAATGCGGTAGC
TGCCGCTGCAGCCTCCGCAGCTGTGGTATCCACAGGCGAAGGAACTACCC
AAAGTAACAGCGCCATCGACATTAAAATAGAGCCCAGCAGTCTGACACTT
ACACCCGAAATGCAGGCTGCTGCAGCAGCTGGGGGGACCATTTACCATCT
GCCACAGCTAGTTCCACCACCTGTACCGCCTCCACCGCCAGGGTCCGGAT
TTGTAAGCGTCAGCGCCAGTACCAGCACCTCCAATACGGTCAGCACCACG
CCACCCAATGTTCTACAGCAGCAACAGCAACTAAACATGTCTGTCGTTCC
TTCGACGGCTATGGCCGCCGCTATGCTAGCCGCCAGTCAGGAACAGCTGC
CCAAGGACTCTAACAGCACGACGGCCAGCGCCGGGAAGTGCTGTCTCTTC
AGATGACGGAAAACGCTGGTACGTCTGCCATTACGAGACTTGTGATTGAA
GTTAAGTATAGTCGAGAATGAAGCTCAATCGGGTAGTTCACAGCAGGACG
GGCGGTTCAATTGCGAACTGGTGCAATTGCCTCCTTCAAGCAGTCGTGCA
ACTTATCACACACGGGAGAAAAAAGCACCGCACCTGAAGGCATCAAGCGG
AATATGGCGCCCTAGCCTTTGCAGGACTTTTTAGACCATCATCTCGTTTT
TGCCCACGCGCTCCAG
FMO07481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATbp-RB | 2269 | CG17172-RB | 101..1240 | 8..1146 | 5255 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23106342..23107285 | 187..1128 | 4140 | 97.8 | Plus |
| X | 23542271 | X | 23106103..23106284 | 8..189 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6931 | 334..508 | 347 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6878 | 346..504 | 338 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2518 | 361..584 | 307 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2542 | 383..624 | 306 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 399..571 | 293 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 403..501 | 245 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7030 | 414..722 | 239 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2710..2858 | 360..512 | 197 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2655 | 357..504 | 195 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 438..639 | 181 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2547 | 438..682 | 180 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6635..6950 | 375..708 | 178 | 56.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 54..175 | 387..506 | 163 | 62.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9084..9205 | 387..506 | 163 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 417..489 | 160 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2665 | 414..490 | 153 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2666 | 434..833 | 152 | 54.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 883..1033 | 350..501 | 136 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1112 | 451..504 | 135 | 72.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..206 | 427..514 | 122 | 61.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9236 | 427..514 | 122 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1564 | 442..508 | 114 | 65.7 | Plus |
FMO07481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:29 Download gff for
FMO07481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RA | 73..1201 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:38 Download gff for
FMO07481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 73..1201 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:04 Download gff for
FMO07481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATbp-RB | 95..1223 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:04 Download gff for
FMO07481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23106097..23106283 | 1..188 | 98 | -> | Plus |
| X | 23106344..23107285 | 189..1128 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:38 Download gff for
FMO07481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 84915..85101 | 1..188 | 98 | -> | Plus |
| XHet | 85162..86103 | 189..1128 | 97 | | Plus |
