FMO07483.5prime Sequence
1192 bp (1017 high quality bases) assembled on 2008-10-22
> FMO07483.5prime
CAGTCGACATGGAAAAGTTTAATAAAGCGCAAGCTAAAAATTTGGCTGCC
GCCCAAAAACTGGTGGACACCTACGCCTCCAGCTCCGAGGATGAAGGCGA
ACTGGATGAGAATCACATTTTGGAACTCCTATACAAGAACTACAAACCGT
CGGACAACGCAGGAAGCTCAAAGGAAGCGGCACGCACCAGTACGTTTCTG
GAAAACACTCTACACTCGGGAGCGGCAACCTGTCTCATTTGCATCGGAAG
CATTCGGCGGGTGGAGGCCATTTGGTCTTGCGAGAGCTGTTACTGCTTCT
TTCACTTGAAGTGCATCCAACGGTGGGCCAACGACAGCATGATGCAGATG
AAGGTAAAGGCGGCAGAGCAGCAGAACGGCCAGGGCCACTACAATCATCT
GGGCGAATTTGTGCCGCCCAAGCGACAGAAATCCCTTCACTGGTGCTGCC
CCAAGTGCCGCAGGGACTACCAACCGGCCGATAAGCCCACGCAGTACAAC
TGCTTCTGCGGCAAGGAGGTGAACCCCGAGAACCAGCCCTTCCTTGTGCC
CCACTCATGCGGAGAGCACTGCGGAAAGCTTTTGCAACCGAAGTGTGGGC
ACGATTGCAAGCTGCTATGTCATCCGGGGCCATGTCCTCCTTGTGCGCAG
CAGGCGCAGGTCTCGTGCCTGTGTGGTAAATCTAGTCCTAGGTCCGTGAG
GTGCATTGACAAGCAGTGGACGTGTCAGCAGACTTGCAAGGAACTTCTAG
CCTGCGGCAAGCACAAATGTAATCAGGTGTGTCATCAGCCAGGAAAGTGT
CCTCCATGCACCAGCAAAAGCTTACAACCTTGCGAGTGCCAGCGGGAGTC
GAAGATGGTCAACTGCTCCGATCGGAAATGGAAGTGTCAGAATGTTTGTG
GAGCTCCATTTGCTTGTGGTTTGCACATTTGCGAGAGTGTGTCACGCTGG
ACCCTGCGGAGATGGAGAGTGTCTTTGCAGTCAGGAGTGCCCATGCGCAG
ATACCCAGGTAAGACCCTGTATGGACGAGGAAACTGGTGGCGATCGTGCT
AAACTTGTCTTGTGCCAGCACACTGCACCACGGTGTCTATCTGAACTTGC
ATTCTACATAAATCAAAAGGAAGTGTCCCTGGCTGACAGATTGCCGTTCA
AAGTGCATCGCGACTAAGTGCGAGACAAATGTGCGCGTGATG
FMO07483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15011-RA | 2631 | CG15011-RA | 26..1114 | 9..1079 | 4965 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4258336..4258947 | 734..123 | 3060 | 100 | Minus |
| 3L | 28110227 | 3L | 4258114..4258274 | 895..735 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 4259013..4259127 | 123..9 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 4257981..4258062 | 973..894 | 345 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:34 has no hits.
FMO07483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:15 Download gff for
FMO07483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15011-RA | 26..1072 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:28 Download gff for
FMO07483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15011-RA | 26..1072 | 9..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:54 Download gff for
FMO07483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15011-RA | 26..1072 | 9..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:54 Download gff for
FMO07483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4257948..4258062 | 894..1003 | 93 | <- | Minus |
| 3L | 4258116..4258274 | 735..893 | 100 | <- | Minus |
| 3L | 4258336..4258946 | 124..734 | 100 | <- | Minus |
| 3L | 4259013..4259127 | 9..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:28 Download gff for
FMO07483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4257948..4258062 | 894..1003 | 93 | <- | Minus |
| arm_3L | 4258116..4258274 | 735..893 | 100 | <- | Minus |
| arm_3L | 4258336..4258946 | 124..734 | 100 | <- | Minus |
| arm_3L | 4259013..4259127 | 9..123 | 100 | | Minus |
