FMO07484.5prime Sequence
1212 bp (1026 high quality bases) assembled on 2008-10-22
> FMO07484.5prime
CAGTCGACATGAGTGTCCTGGCGTATCCACGTACCAACGACGAGGAGATT
TTCCGTCACTGCACCAAGGACTGCGGCATGGTGACGGCCACAGATGACTT
CCAGTACTTCGCCCTGCGTTGCATCTTCTGCAGCGAGAAGTTTCTCTACT
TCGACTCCTTCATCGGCCACATGCAGACAGTTCACCTGGGCGACCAGTCC
GTGGCGAATACCTCCTCCCGTCTCCCCTTCAATCTCGGCGAGCCCATGTC
CCTGTCCGGTCGTAATGGGGATCTGCCCAACTTCCACGAGATCGAAGACT
TAACGGACGCGGACACAGCGCTGCTGGAGCCCCAAATGGTCATCAAACAA
GAGCTCCAGGATCTGCCCTGCAGCGATGATGATGTGGTCGCCGGCGAAGA
AGACGACGATGAGCAACGGCTGAACGATTCCGAGGCCGATGAGGACGAGG
CCATATTACCCGAAAGCGATGTACCGGTGGTCAGTTCCAAGACGCGGGCA
CGCAAAAAGGTCACAAAGCAGCGCCAGAGGGACATGTCTAGCGAGCTTCT
CATCGCCGGTGACGGCGATTCATCCATGGACGACTACGGTGATCCGGATC
ACAGCTATATGGACGACAATTCCGGAGAGTACATGGACTTTGCTGGATTC
GACGGCGTTAACCACAGTGGTTTCGGAACCGAATCGGACTTTCTCAGCTA
TGATGAGATGGTGGAGGAGTCCCTGCTGGGACGCGACCGGGAGGTTACGA
TGCACATCAAGGACCGCAAGATGATCCAGTTTCTCATCCACTCGTATCAG
CGCAACCCCTTTTTGTGGGACCACGGCAATGCACAGTTCCGGGATCGCGT
TAAGCGCGCCCGCTTCCTCGACTGGATTGTGCTGGAGTTCAAGAGCCGGT
TTAACATCTCGCTGGCCAAGGACGCCATCACCCGTAGTGGGACACTGCGC
ACGTTAAACAAGCGGGGAGTGCAATCGCATGGCTCTGGAAGAAGAACCAC
ATCAGTACGCTGGTGGTACTTCAGGGAGCTGCACTTTCTTCAACGAGTAT
ACAGCTACAACGATAAGAATGTCCGATGCCTGTTGTAGGAAACTTCCTTC
GGCCGCCCGCCTTTCCTGGCCAATTTGACCGTTCGCTCACTGCAAGCTCT
GTGAACATGGGTAGCGTATCAGGCCTATACACTCGCTCGATCCGGACCAT
CGCAGGAGCATG
FMO07484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8944-RB | 4350 | CG8944-RB | 190..1279 | 9..1098 | 5095 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15745320..15746042 | 731..9 | 3615 | 100 | Minus |
| X | 23542271 | X | 15744823..15745169 | 1079..732 | 1260 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:45 has no hits.
FMO07484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:17 Download gff for
FMO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 159..1264 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:53 Download gff for
FMO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 183..1288 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:32 Download gff for
FMO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8944-RB | 183..1288 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:32 Download gff for
FMO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15744817..15745169 | 732..1086 | 95 | <- | Minus |
| X | 15745320..15746046 | 1..731 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:53 Download gff for
FMO07484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15638850..15639202 | 732..1086 | 95 | <- | Minus |
| arm_X | 15639353..15640079 | 1..731 | 99 | | Minus |
