FMO07485.5prime Sequence
1167 bp (1011 high quality bases) assembled on 2008-10-22
> FMO07485.5prime
CAGTCGACATGAACGGCCTGAGCAGCAATGATGATGCAGTCGAGTGCCCT
TTGTGTATGGAGCCGCTTGAGGTGGACGATCTGACCTTCTTTCCGTGTAC
CTGCGGATATCAGATTTGCCGATTCTGTTGGCATAGGATCCGCACGGATG
AGAACAAGCTGTGTCCGGCATGCCGAAAGGAGTATCCCGAGAATCCAGCT
GACTTCAAGCCGCTGTCGCAGGAGGAAATGATTGCCTTCAAGTCCCAGAA
ACGCCAAAGGGACCAACAACGAAAACAAAAGATCACCGAGAACCGCAAAC
ACTTGGCCAACGTTCGCGTTGTCCAAAAGAACTTGGTGTTCGTTGTGGGG
CTACCGCCACGACTTGCTGATGCAGACATATTAAAGAAACACGAGTATTT
CGGTAAATATGGGAAAATTCATAAAGTCGTTATAAATCCAAGTACCACGT
ATGCCGGGGTCCAGGGTCCATCTGCTTCTGCGTATGTCACATATGTTAAT
AACTCGGATGCCTTGCGGGCCATTCAAAGCGTCAATAATATTATGATAGA
CGGTCGGCTTATAAAGACCAGCTTGGGGACAACCAAATACTGTAGCCACT
TCATGAAGAACCAGCAGTGTCCCAAGGGCGACTGCATGTACTTACATGAA
TTGGGCGATCCCGAGGCCAGTTTCACAAAGGAGGAAATGCATCAGGGAAA
GCACCTGGAGTACGAGAAGCGCCTGCACGATACTCTAATTGCGTCATTGG
GACCGAATGCAACAGGTATTGTAAATGTCGCGATTCCATCGTCATCGTCA
GCGTCATCCTCGTCCTCTGGATCGGGTACAAATGGTTCAAGTGCATCAGT
AATGCCCAGCAAAAGAGGCCTGGCCAAGCTTATCGGTCTCGCCATCATGG
CAAAGAGGCGGCTGCCACTGCGACCAGTTCAGTGGGAAAAGTAAACGGGA
AAAGCTGCGCACGAGAGAGCACGAGAGACAGCGAAGAATAAGACGCAGCA
ATACAAACGCCATGCCTCGAACAGAACTATGTCCCGAACGAAGCAGCACA
GTACTGAAACTCGCGAAGCTACGGCGCAGCACCGCTTCCACAGCGACCGC
CGCAAGCCTTACATACATGCGATCTGGAGATCGACCCGCTAGTCAGAACT
TAAAAAGACACGGAACG
FMO07485.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnot4-RA | 3615 | CG31716-RA | 348..1459 | 9..1091 | 4850 | 97.1 | Plus |
| Cnot4-RB | 3644 | CG31716-RB | 377..1488 | 9..1091 | 4850 | 97.1 | Plus |
| Cnot4-RE | 3554 | CG31716-RE | 287..1398 | 9..1091 | 4850 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10399315..10399536 | 463..684 | 1110 | 100 | Plus |
| 2L | 23513712 | 2L | 10398444..10398597 | 228..381 | 755 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10399767..10399956 | 777..961 | 700 | 97.4 | Plus |
| 2L | 23513712 | 2L | 10398276..10398392 | 111..227 | 585 | 100 | Plus |
| 2L | 23513712 | 2L | 10398115..10398219 | 9..113 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 10399593..10399688 | 682..777 | 480 | 100 | Plus |
| 2L | 23513712 | 2L | 10398654..10398741 | 378..465 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:06 has no hits.
FMO07485.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:33 Download gff for
FMO07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31716-RE | 292..1309 | 9..1012 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:30 Download gff for
FMO07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnot4-RE | 287..1304 | 9..1012 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:56 Download gff for
FMO07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnot4-RE | 287..1304 | 9..1012 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:56 Download gff for
FMO07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10398115..10398219 | 9..113 | 100 | -> | Plus |
| 2L | 10398279..10398392 | 114..227 | 100 | -> | Plus |
| 2L | 10398444..10398593 | 228..377 | 100 | -> | Plus |
| 2L | 10398654..10398740 | 378..464 | 100 | -> | Plus |
| 2L | 10399317..10399535 | 465..683 | 100 | -> | Plus |
| 2L | 10399595..10399688 | 684..777 | 100 | -> | Plus |
| 2L | 10399768..10400016 | 778..1012 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:30 Download gff for
FMO07485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10398115..10398219 | 9..113 | 100 | -> | Plus |
| arm_2L | 10398279..10398392 | 114..227 | 100 | -> | Plus |
| arm_2L | 10398444..10398593 | 228..377 | 100 | -> | Plus |
| arm_2L | 10398654..10398740 | 378..464 | 100 | -> | Plus |
| arm_2L | 10399317..10399535 | 465..683 | 100 | -> | Plus |
| arm_2L | 10399595..10399688 | 684..777 | 100 | -> | Plus |
| arm_2L | 10399768..10400016 | 778..1012 | 94 | == | Plus |
