FMO07487.5prime Sequence
1216 bp (1008 high quality bases) assembled on 2008-10-22
> FMO07487.5prime
ATTAAACAAAGTTATCAGTCGACATGCCATCGCCGCACGAAAAGGATGCT
AACAAAGCGGCAGAAACGGCAGCCAAAGAAAATGCCGCCGATAAGGTAAG
CGATGTGGAAAATGCATCGGTTACTGCGGGGGTGGCGAAAGCCGTGGGGG
CACAGCCGGAAAGGGGCTCCAAAGATGCAGCCGAATCCCCCGCCGCTGTC
GACGCCTCTGCCTCTGCCGCCACTGATGACGTCGCTGATAAAAAAGCCAA
AGGAGACTCAACGGCTGTTTCAAATACCGAATCGGATGCAGCTGCAGCGG
ACAAAAAGGAGAAATCCCCCTCGCCGGTAATAAAGAAGTCCAACAATAAG
GATGCTAAAAAGGAGGACAACTCCGAAAAGGACGAGGAGAACTCGGAAGA
CGGCGATGAGCCAGAAGATGAGGCTGATGAGAAAGCTAGCGATGAAGAGA
GCGAGAAGAAGAAACCGAAATTAGATGCAGAGGACAAGATAAAGGATGCC
ACTGATGAGTCCAAGCCAAAATCGGGAGCCGATAAGCCCAAGAAACCTGA
GCCCAAGGCCAAGAATGGCAAGGTGGCTAAGGAGGAGGACGACGACGAAG
AGGACGAGGATGATGAGGATGCCGAAGATGACGATGGAGACGAGAACGAT
GGCCTGGACAAGAACAACGAGGTGGCCGAGGATGATGAGAATGTCGTCGC
TCTCGCCGAGATTGATCGCATTAATGAGAATATCAACAAGACTCGTGTAG
ATGGTCTGCAAACATTGCATGCAATCTGCTTTGGCGCCCAAGGCAAGAAC
AATGTGGTCAAGAAGAACTTGCGATCCTTTGCCGGTTTCGAGTTTGCCAA
GGATTCAGCGGAGTACAACAAAAGCTGGAGGCCATCAAAAAGTGGATATA
AGGCCTGCGCAGCATCTGCGAGATCCTTACCCTCGATCGCAAGGCAGCAA
GAACGAGACTGTCCTTCGAGTGCTCAATTCCTAATGGAACCGACGAGTCG
CTTTGCTTGAGCAAGTGATGAGAGAGAGAGATGCCGAGGACGAGGATCTT
GATGAGATGAGGAGGACCGCCAGTGAAAGAACAAGAAGCCAGGACGGAAG
TCTAGCGCGGGCCTGCAAAGCCTGCAGCATCCACGGACGTTCAGGCGCCG
CAGAAAAAGGTTCGCTATGAATTTCTCGCTCTGACAGATGCCGACCAAGA
GTGTGCAGTTCTCCCG
FMO07487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dek-RB | 2559 | CG5935-RB | 143..1248 | 23..1107 | 4955 | 97.7 | Plus |
| Dek-RC | 2579 | CG5935-RC | 92..1180 | 40..1107 | 4870 | 97.7 | Plus |
| Dek-RE | 3947 | CG5935-RE | 84..1168 | 44..1107 | 4850 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16857631..16858114 | 290..773 | 2420 | 100 | Plus |
| 2R | 25286936 | 2R | 16856784..16857052 | 23..291 | 1345 | 100 | Plus |
| 2R | 25286936 | 2R | 16858181..16858423 | 774..1009 | 870 | 96.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:41 has no hits.
FMO07487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:24 Download gff for
FMO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RB | 153..1245 | 13..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:39 Download gff for
FMO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RB | 135..1227 | 13..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:12 Download gff for
FMO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dek-RB | 135..1227 | 13..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:12 Download gff for
FMO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16856776..16857052 | 13..291 | 98 | -> | Plus |
| 2R | 16857633..16858114 | 292..773 | 100 | -> | Plus |
| 2R | 16858181..16858514 | 774..1089 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:39 Download gff for
FMO07487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12744281..12744557 | 13..291 | 98 | -> | Plus |
| arm_2R | 12745138..12745619 | 292..773 | 100 | -> | Plus |
| arm_2R | 12745686..12746019 | 774..1089 | 93 | | Plus |
