FMO07488.5prime Sequence
1222 bp (1048 high quality bases) assembled on 2008-10-22
> FMO07488.5prime
CAGTCGACATGTCCAAAATGAAAATGCTCCCAGTACAGTTATCATTGAAC
TCGCTGAATCCCGGCATCTGGAGCGATGTGCTGTGGCGCTGTCCCCCAGC
GCCGTCCAGCCAGCTGGCGGAGCTTAAGACGCAACTGCCCCCATCCCTGC
CTTCCGATCCGCGCCTCTGGAGCCGCGAGGATGTGCTTGTCTTCCTGCGG
TTCTGCGTCCGCGAATTCGATCTCCCCAAACTTGACTTTGATCTCTTCCA
AATGAACGGCAAGGCGCTGTGCTTGCTGACGCGGGCGGACTTTGGTCACC
GGTGTCCTGGGGCAGGAGATGTGCTCCACAATGTGCTGCAGATGTTGATC
ATAGAGTCCCACATGATGCAGTGGCACCTGCCTAATAGTCCAGTGACGCC
CACCAGTCGTTATCCCCTGTCGCCGCACAGCCATCCGCCGACGCCCACGT
GGCCACCGCTGAATGCTCCTCCCGAGAACAGTCCCTTCCACAGTTCTGCT
CACAGTCTGGCAGGCCACCATTTTATGGCGCCTAACTCGGTTACGCTGAG
TCCTCCGCCCTCGGTGGATTCCCAGGCGAGTAGTCCTCCCCAGGCACCTT
ACCAAAATGGAGGAGCCACTGGAGCAGCACCAGGATCAGCAGGAGGATCA
GCACCAGCTGCAGGAGGAGCCACAAACACCAGCAATCCCACGTCGTCGAG
TGCCAGCAGCACCGGCAGCAATGGCTCCCAGCCGAACATTATGCCCATGA
AGGGTATTAGCAGTGCCAGCAGTAATCACTCTGATTCCGAGGAGGAGTAC
TCTGAGACCAGTGGTGGAGTGAGCAAGATGCCACCAGCACCACTGTCCTA
CAGCACGGCCAGTCCGCCAGGAACACCCATACTGAAAGATATTAAGCCGA
ATTGGACGCAACAGCTCACGAATAGTTTTGTGACTCATGGTCCCAGCAGC
AGCAACAGCAGCAGCAGCAACAAGCTGCTGCAGTGCCGCAGTAGCTGCTC
AGGCGCAGCAGCACCAGTTGCAGCACAGCAGCAGCCACAACAATTGCCCA
AGAGCTGACCTGATAATACTGCTGGTCCGTGTGTGACCCCTGCTGGAGAT
CCATTCTCCGCACCTACCAGGCCCAGTTATATGTACAAAGCAAAAAGGGA
GTTCCTTCCCGAAAATTCTGGACCAATACCAATGTGGCCCCGTGTGTGGA
ACTCTTTGTGCAACCTGGCGTG
FMO07488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aop-RE | 3936 | CG3166-RE | 999..2182 | 8..1184 | 5520 | 98.3 | Plus |
| aop-RD | 4181 | CG3166-RD | 609..1792 | 8..1184 | 5520 | 98.3 | Plus |
| aop-RC | 4936 | CG3166-RC | 1056..2239 | 8..1184 | 5520 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2159324..2160492 | 1170..8 | 5340 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:09:37 has no hits.
FMO07488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:25 Download gff for
FMO07488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RA | 378..1559 | 1..1179 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:30 Download gff for
FMO07488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 1053..2234 | 1..1179 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:55 Download gff for
FMO07488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aop-RC | 1053..2234 | 1..1179 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:55 Download gff for
FMO07488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2159314..2160495 | 1..1179 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:30 Download gff for
FMO07488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2159314..2160495 | 1..1179 | 98 | | Minus |
