FMO07489.5prime Sequence
1230 bp (1017 high quality bases) assembled on 2008-10-22
> FMO07489.5prime
CAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCTACCCGACG
GCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGCCATGGCGG
AGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCCCTCGGGCG
GCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAGGTGCTGTT
TCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACATCGCCGGC
GGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATCTGCTGCCC
AGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGACCCATCATC
ACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTACGATCCGGC
CCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTCCGGCGGCG
TGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAACAGAACCCT
TACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCTCTGAGCAA
TCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAGCGCCTGGA
CATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACGATCCCACG
CTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCCAGGCGGAA
GACGCCACGCGGGAATCCACGGCCACGTTGAAGGCCTGGCTGAGTGAGCA
CAAGAAGAATCCATATCCGACGAAGGGTGAGAAGATTATGCTGGCCATCA
TCACCAAGATGACCCTCACCCAGGTGTCCACGTGGTTTGCCAATGCACGT
CGTCGGCTGAAAAAGGAGAACAAGATGACGTGGGAGCCGAAGAATAAGAC
GAGACGATGATGATGGCATGATGTCCGACGATGAAAAGAAAGGATGCTGG
CGATGGTGGGAAACTCTCTACAGAAGCTTTCGATCCCGGCAATCAACTTA
TCAAATCCGAACTGGGCAAGCGGAAGGAGGTGGACGGTATTGGTGACCAG
AAACTGGATCTGAACCGGGACCCACCAATTCTGGGTGCCATGGCGTGACT
GGCCATATGCACGCCCCCAGGCCCCATCCAATGCACGCGCTTCAGTCGAT
GCCAATCCAAAACGCATAGCCCCTATCAGCAATGCAACTCTCATGCACGA
CGCAAGCAATCTGCAAGCGTGCCTGTCCAC
FMO07489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caup-RA | 4317 | CG10605-RA | 1139..2281 | 9..1139 | 5250 | 98 | Plus |
| ara-RB | 2918 | CG10571-RB | 819..1427 | 318..938 | 985 | 78.4 | Plus |
| ara-RA | 2942 | CG10571-RA | 1215..1451 | 704..938 | 790 | 89.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12616800..12617288 | 57..545 | 2445 | 100 | Plus |
| 3L | 28110227 | 3L | 12618341..12618664 | 664..982 | 1410 | 97.8 | Plus |
| 3L | 28110227 | 3L | 12594229..12594420 | 704..895 | 750 | 92.7 | Plus |
| 3L | 28110227 | 3L | 12617590..12617709 | 545..664 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 12707410..12707603 | 702..895 | 490 | 83.5 | Plus |
| 3L | 28110227 | 3L | 12619594..12619762 | 978..1139 | 360 | 86.4 | Plus |
| 3L | 28110227 | 3L | 12610769..12610819 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:00 has no hits.
FMO07489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:27 Download gff for
FMO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 634..1803 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:45 Download gff for
FMO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1129..2298 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:22 Download gff for
FMO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caup-RA | 1129..2298 | 1..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:22 Download gff for
FMO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12610759..12610819 | 1..59 | 93 | -> | Plus |
| 3L | 12616803..12617288 | 60..545 | 100 | -> | Plus |
| 3L | 12617591..12617709 | 546..664 | 100 | -> | Plus |
| 3L | 12618342..12618664 | 665..982 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:45 Download gff for
FMO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12603859..12603919 | 1..59 | 93 | -> | Plus |
| arm_3L | 12609903..12610388 | 60..545 | 100 | -> | Plus |
| arm_3L | 12610691..12610809 | 546..664 | 100 | -> | Plus |
| arm_3L | 12611442..12611764 | 665..982 | 98 | -> | Plus |
