FMO07490.5prime Sequence
1232 bp (1040 high quality bases) assembled on 2008-10-22
> FMO07490.5prime
CAGTCGACATGTCGTCCAGTGAGCCACCGCCTCGTTACGAGCCACCCGTG
GAGCCAGTCAATGGCATTGTACAGCCACCGGTGATTCCACCAGCGGAGCG
GCCCGGCCGCAATACGAACCAATTGCAATATCTGATCAAGACGGTGATGA
AGGTGATATGGAAGCACCACTTCTCGTGGCCCTTTCAACAGCCCGTCGAT
GCCAAGAAGCTCAACCTGCCCGACTACCACAAGATCATCAAACAACCCAT
GGACATGGGTACGATCAAGAAGCGGCTGGAGAACAACTACTATTGGTCCG
CCAAGGAGACCATACAGGACTTCAATACGATGTTCAACAATTGCTATGTC
TACAACAAGCCCGGCGAGGATGTAGTGGTTATGGCCCAGACGCTCGAGAA
GGTCTTCCTGCAGAAGATCGAATCGATGCCTAAGGAGGAGCTTGAACTGG
AGCCGGTCACGGCCAAGGGTGGCAAAAAGAAGCAACGGGCGCCGGCTACG
CCCAAGTCATCGTCGGGTGGCGCTGGAGCATCCACCGGTTCTGGTACATC
CTCGGCAGCAGTTACCAGCGGACCAGGTAGTGGCTCCACCAAGGTGTCAG
TCGCTGCCTCATCCGCACAACAGTCCGGCCTGCAAGGAGCGACGGGAGCA
GGCGGTGGATCTTCAAGTACACCGGGAACTCAGCCGGGTTCCGGTGCGGG
AGGAGCGATCGCCGCCCGACCCGTATCCGCCATGGGCGGCACGGTTTCAT
CGACGGCCGGCGGTGCACCGTCCATACCACCGATTAGCACAATGCCACCG
CACACGGTACCCGGCAGCACCAATACGACGACGACAGCGATGGCTGGCGG
CGTTGGTGGGCCAGGTGCAGCTGGAGCCAATCCCAATGCTGCCGCCCTGA
TGGCTAGTCTTCTGAATGCGGGCCAAACGGGCGCCTATCCCGGTGCGCCG
GCAGACGGCGGTCAATAGCTCCTCGCTTCTAGATGGCAGTACGCCGCATA
CGGCGCAGCAGCACGCTGCGGCGGCCGCGGCGGCGCAGGAGTGCAGCGGG
GAGCCGCTGAAGAGACAGAAATACCACAGTTTCCGTCATGCCGCTACGCG
TTCAGCCTATGTGAATGCGGGCGTTGACGTCGGATTGAACCTGTAAACCG
CCTCACGCCCGCAATAGAGGTTCACGAATGGCGACAACAAGCTAAGGCCA
TGTCCTTGATATCCGCTACATGCACAGAGGAA
FMO07490.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)h-RI | 8716 | CG2252-RI | 657..1823 | 8..1155 | 5135 | 97.3 | Plus |
| fs(1)h-RH | 9076 | CG2252-RH | 1047..2213 | 8..1155 | 5135 | 97.3 | Plus |
| fs(1)h-RG | 9949 | CG2252-RG | 637..1803 | 8..1155 | 5135 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8054442..8055428 | 992..8 | 4855 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 22:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1335..1381 | 138..184 | 118 | 72.3 | Plus |
FMO07490.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:28 Download gff for
FMO07490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)h-RC | 984..2139 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:34 Download gff for
FMO07490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)h-RG | 631..1786 | 1..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:11 Download gff for
FMO07490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)h-RG | 631..1786 | 1..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:11 Download gff for
FMO07490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8054279..8055431 | 1..1140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:34 Download gff for
FMO07490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7948312..7949464 | 1..1140 | 97 | | Minus |
