FMO07491.5prime Sequence
1215 bp (998 high quality bases) assembled on 2008-10-22
> FMO07491.5prime
CAGTCGACATGACTGAAAGCAAGAATGATACAAAATCTTGGGCACCCAAA
CAAATTTGGATTAAGGATGTTCTCAAGAAATCGGGCACGGAACTGCTCGA
TATATCCAAGAGTCCCGCAAAGGCTGTTGCCGTCAAAAAATCGCCGGCGA
AAGATTCAGCCACAACCAAAATGGTTTACTATTCCGCCAACCAGCTGCTT
ATAAAAACGGAACAATCTAGTCAGGCGCAGTTCTGCCTCCAGGTTCCGCC
TCCACTAACAGCGACGACCACGAGCGTGGGCCTAGGAGTTCCGCCATCCG
GCGGCCAACAGGAGCACTTCGAGCTGCTGCAGACGCCGCAGCAGCGACAA
ATGCAACTGCAGCTACAGGACCAGCACCAGCAGGAGCAGCAGCAGTTTGT
CAGCTACCAACTGGCCATCCAGCAGCATCAGAAGCAGCAACAACAGCAGC
AACATGAAAGTATTACGAACGCAGCACCCACAGCAGCTCCATCAGCCCAG
CGGATCAAGACAGAGCCCGTCGGCGGATTCCCAGCGTCGGCAGCCGTGGT
GTCGCAGGTGCGCAAGCCCAGCGCCAGCAAACCGCAATTCAAGTGCGACC
AGTGTGGCATGACCTTTGGCAGCAAGTCCGCCCACACCTCACACACCAAG
TCGCACTCGAAGAACCAAGATCTGTCGCTTAATGGCGCCTCTGGAGCCGG
CGTTGCTGCGCCCGTCTCAACCGCGGCCATCGAGCTCAATGATGCCGGTC
TGCCGGTGGGCATTCCCAAGAGCCCCACCATCAAGCCGCTGGCCAACGTG
GCCGCCGGAGCAGATCCCTATCAGTGCATGTTTGCCAGAAAACATCGCCG
TACCCGCCAGGCTGATCCGCCACTACCGCACCCACAACTGGTGAACGGCC
ATTCGAGTGCGAGTTCTGCACAAGCTGTTCAGCGTGAAAGTGAACCTCCA
GTGCCACCGGCCGCATCCACACGAAGAGCGTCGTACAAGTGTTGACGTCT
GGTGGACGGCATTCGAACACTCCTGGAAGCTTCACGTACATGCCCATTCC
ACACGGCGAGCGCCAACAAAGTGCTCCGGTGGGCAGAGACCTTCATCAAT
CGGCCAGCTGGTGTATCAAATGGCCAGCCAACCGGCAAAAGCGTAATCCG
GAATCGGATGGTAGTTCACTGTCCAGCACTCAGGTGAACTCGCAGTACAT
ACATACGCGCGATGA
FMO07491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kr-h1-RB | 4168 | CG45074-RB | 689..1801 | 9..1113 | 4885 | 97.1 | Plus |
| CG45075-RA | 4168 | CG45075-RA | 689..1801 | 9..1113 | 4885 | 97.1 | Plus |
| Kr-h1-RA | 4473 | CG45074-RA | 1138..2106 | 153..1113 | 4165 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6092993..6093707 | 152..864 | 3475 | 99.7 | Plus |
| 2L | 23513712 | 2L | 6092100..6092244 | 9..153 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 6093792..6093963 | 864..1035 | 395 | 89.7 | Plus |
Blast to na_te.dros performed 2014-11-28 19:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6944 | 322..541 | 312 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2543 | 331..590 | 282 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6945 | 306..517 | 276 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2523 | 306..496 | 259 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6906 | 306..454 | 257 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6923 | 306..447 | 234 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6856 | 348..503 | 221 | 66.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1168 | 353..461 | 203 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1130 | 391..496 | 202 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 376..496 | 190 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6956 | 420..654 | 187 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1178 | 385..510 | 182 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 380..496 | 176 | 65.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1137 | 346..454 | 173 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2379 | 413..496 | 172 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2462 | 420..546 | 170 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 372..495 | 165 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6782 | 390..496 | 155 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2663 | 420..458 | 150 | 87.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2397 | 389..496 | 147 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1590 | 423..499 | 142 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1587 | 377..453 | 135 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1478..1582 | 346..454 | 128 | 63.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1033 | 421..484 | 122 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1589 | 420..480 | 121 | 68.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1011 | 420..450 | 119 | 87.1 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 7585..7623 | 610..572 | 114 | 76.9 | Minus |
FMO07491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:29 Download gff for
FMO07491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 674..1708 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:37 Download gff for
FMO07491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kr-h1-RB | 674..1708 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:35 Download gff for
FMO07491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45075-RA | 679..1713 | 1..1031 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:35 Download gff for
FMO07491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6092090..6092244 | 1..153 | 97 | -> | Plus |
| 2L | 6092995..6093707 | 154..864 | 99 | -> | Plus |
| 2L | 6093793..6093959 | 865..1031 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:37 Download gff for
FMO07491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6092090..6092244 | 1..153 | 97 | -> | Plus |
| arm_2L | 6092995..6093707 | 154..864 | 99 | -> | Plus |
| arm_2L | 6093793..6093959 | 865..1031 | 92 | == | Plus |
