FMO07494.5prime Sequence
1227 bp (1002 high quality bases) assembled on 2008-10-22
> FMO07494.5prime
CAGTCGACATGTCATCGTCCAACCAGGCCGAGGAGACTACCCCGAACCTC
CACGTGGAGGATGGAGACTTATCCGGAGGCGCCTTGCAGCAGGAATTCCT
CTACTGCGAGAGCTGCGGCAATGTATACGAGGACACCGAGTCTTACGACA
GGGCCCACGGTCCGCAGGCCGGCTGCTGCACCGGCGCTAGCGGGGAATTG
GATTTCATCGAGGAGGTCGCCGAAGATTGCATTTCGGAAGAGGTCGGGGA
AGAGGACATTGTCTACGCAGACGTACCCCTCTGGGAGCTGGTGGAGGAAG
TTCCGGCCAACGTGAAGGCGGAGAAGGACCAAAACGAGCCTAGCAATTCC
GATCGCTACTTCTGTTACGACTGCCACAGCATTTTCGAGAACCGAAATAA
AGCTGAGGAGCACATATGTCCGCGGGCGGAATCCGGCGGGTCCAGCCAAC
AAGATGGCGATGCGAAAGCACCCGTCCGGCGAAAGTTGGCCAGTGTCAGT
GCAAGGACGGGTCCGAGAGACGCATCATCCGTTATTAGCTGCGGAATCTG
CAACACCGTTTTTAGCTCGGAGAAGTTTCTCAAATTCCACATGCGCATTC
ATGAGAATCGAGCTCCCAAGAGCATTCAGGACGCCCTTCCTATAGGCGCC
CATCAGCAGTACAGCGAGCTGGACCAGTTCTACTGCGAAATATGCAACAA
AAGCTTCGATGAAACCCTCCTGACGGTACACAAACAGATGCACCAACAGG
AATCTAGTGAGATTATGTGCAGCATTTGCAACCGGAAGTTTGAGAACGAA
GTTACCTATCAGATGCACCAAAAAATCCATGAGAAACCGCGCGACTCCGA
GTCCTCCCGTAAATTAGCCCAGCGTACTAGTCTCGATAAGGAGAACCCGG
GTTTCCCTGCCAGTACTGCGAGAGGGTGTCATCCGCCCCTTTGAAAAGTC
AAGCACGAACGGGTTCCACACGGAGAAAAGCCTTACGCCTGCGAGTCTGC
GCAAAACTTTTCGGGTGTCATATTCCCTGACCCTTCATCTTGCGTACCCA
CACAAACATTCGGCCGTATGTGTGCACGGGTGGCAAAAGCCCTTAATCGC
ACAAGGTGTACTCCCACCACCTTGCCATCCAGTCCGAACGACGGTTCTAC
GGCAATCGTGCCGGACTTCGAACGTCGTACCGTAAAGCCCACAAAAAACT
CACTCAAGGGCTTTACCGGTGTGTTTC
FMO07494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Opbp-RA | 1829 | CG30443-RA | 98..1246 | 8..1146 | 5215 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6653373..6654060 | 16..703 | 3440 | 100 | Plus |
| 2R | 25286936 | 2R | 6654115..6654496 | 702..1079 | 1480 | 96.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:21 has no hits.
FMO07494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:30 Download gff for
FMO07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Opbp-RA | 77..1226 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:28 Download gff for
FMO07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Opbp-RA | 93..1242 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:15 Download gff for
FMO07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Opbp-RA | 93..1242 | 1..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:15 Download gff for
FMO07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6653365..6654060 | 7..703 | 99 | -> | Plus |
| 2R | 6654117..6654509 | 704..1090 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:28 Download gff for
FMO07494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2540870..2541565 | 7..703 | 99 | -> | Plus |
| arm_2R | 2541622..2542014 | 704..1090 | 95 | -> | Plus |
