FMO07495.5prime Sequence
1171 bp (1037 high quality bases) assembled on 2008-10-22
> FMO07495.5prime
CAGTCGACATGGGCAGCCAAAACTCGGACGACGACAGTGGTTCATCCGGT
TCGAGTCGAAGTGGAAGCCGCAGTGTCACGCCGCAAGGAGGTAGTGCGCC
CGGATCCCAACGCAGTCGCAGGTCGGGTAGTGGCAGCGATCGTTCCCGAT
CGGGCTCCAGGTCTTCCCGATCCCGGTCCGGCTCTGGGTCTCCGCGTAGT
GCCAGGTCCGGGTCTGCAGAAAGCCGCCACTCGCAGCTGTCTGGCTCCGC
TCGTAGTAAGAGATCAAGATCTGCTCACAGTCGCAGGTCGGGATCTGCGC
GTAGCCGTAAATCTGGAACTCCGGAATCTCCACAAAGTCACAGATCAGGT
TCGTTGCAAAGTCGCAAGTCAGGATCGCCTCAGAGTCGTAGATCTGGTTC
TCCCCAAAGTCGCAAATCGGGATCTACTCACAGCCGCAGATCCGGTTCGG
CCCACAGTCGCAGATCGGGATCCGCTCGGAGTCGCAAATCTGGTTCGGCA
CAAAGTGACCGCTCTGAGTCTCGATCGAGGTCTCATAGCGGTTCACTCAA
GGGCAACGAGGAATCGCGGTCTAATTCGCCCAATCTGCAAATTGACGTAG
AGCGTGCCAATTCCAAGAGCGGCAGTCGCAGCAGAAGTAGGAGCAGGAGT
GGCAGTCGCACTTCCAGATCGCGTTCCAAGACGGGCACGCCGTCGCCCAA
TAGAAGTCGTAGTGGCAGCGCATCCGGCTCCGGCAGCGATGTGGGTGTGC
CCAAGAAGAAAGCACGCAAGGCGAGTGGCTCCGATCAAGAGAAGAAAAAG
AGCGGCAGCGATAGCGACATTGAGGAATCGCCCACCAAAGCTAAGAAGTC
ACGGCTGATCGACACTGATAGCGATTCCATCAGGATGTGGGAAAGAAAGC
TCCGGCTGCAGCTGACATATTTGGAGATGCCGATGATATAGTGACGATGA
GATGAGCTGGACCAGCTGCCAGAAAATCCCCAGTGCGCTCCAAGAAGCCG
CAGTCAAGCAAGTTCCCACTCCCACAGTCGTTCTATGAGCCCTCCGTTCC
GCTCCGATCGCGATCCGGATAAAGTCGAGAGCAAGTAATCGGGCCAAGGA
GGATGACCCTGAACCGCTCGGGAACCGAATCGATGGAAATCCCGCATCCT
CTGCAACCTGGAAAGACACCC
FMO07495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atu-RA | 2351 | CG1433-RA | 105..1248 | 9..1135 | 5190 | 97.9 | Plus |
| Atu-RA | 2351 | CG1433-RA | 422..554 | 374..506 | 200 | 76.7 | Plus |
| Atu-RA | 2351 | CG1433-RA | 470..602 | 326..458 | 200 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5613687..5614475 | 103..890 | 3880 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5614574..5614728 | 889..1041 | 505 | 94.2 | Plus |
| 3R | 32079331 | 3R | 5613559..5613623 | 39..103 | 325 | 100 | Plus |
| 3R | 32079331 | 3R | 5613910..5614042 | 374..506 | 200 | 76.7 | Plus |
| 3R | 32079331 | 3R | 5613958..5614090 | 326..458 | 200 | 76.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:40 has no hits.
FMO07495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:32 Download gff for
FMO07495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 99..1242 | 9..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:05 Download gff for
FMO07495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 105..1248 | 9..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:11 Download gff for
FMO07495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atu-RA | 105..1248 | 9..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:11 Download gff for
FMO07495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5613462..5613492 | 9..39 | 100 | -> | Plus |
| 3R | 5613560..5613623 | 40..103 | 100 | -> | Plus |
| 3R | 5613688..5614474 | 104..889 | 99 | -> | Plus |
| 3R | 5614575..5614836 | 890..1135 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:05 Download gff for
FMO07495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1439184..1439214 | 9..39 | 100 | -> | Plus |
| arm_3R | 1439282..1439345 | 40..103 | 100 | -> | Plus |
| arm_3R | 1439410..1440196 | 104..889 | 99 | -> | Plus |
| arm_3R | 1440297..1440558 | 890..1135 | 91 | | Plus |
