Clone FMO07509 Report

Search the DGRC for FMO07509

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:75
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9344-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07509.5prime Sequence

263 bp (263 high quality bases) assembled on 2008-10-22

> FMO07509.5prime
CAGTCGACATGTCCCGCAAAGAGGCCCTGTCGCAGTTCATCAATCAGATA
CACGGACGCCCCGTCGCCGTAAAGCTGAACAACGGCGTTGACTATCGAGG
TGTGCTGGCCTGTCTGGATGGCTACATGAACATCTGCCTGGAGCAGACGG
AGGAGTACGTGAATGGGCAGCTGAAGAACAAGTACGGCGACGCCTTCATC
CGCGGCAACAATGTCCTCTACATTTCCACGCAGAAGCGGAGGGTCGCAAG
CTTTCTAGACCAT

FMO07509.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9344-RA 474 CG9344-RA 100..336 9..245 1185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20977315..20977462 98..245 740 100 Plus
2R 25286936 2R 20977155..20977248 9..102 470 100 Plus
Blast to na_te.dros performed 2014-11-28 21:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 3044..3102 141..198 112 67.8 Plus

FMO07509.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:07:48 Download gff for FMO07509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9344-RA 100..340 9..249 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:35 Download gff for FMO07509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9344-RA 100..340 9..249 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:26 Download gff for FMO07509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9344-RA 100..340 9..249 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:26 Download gff for FMO07509.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20977155..20977245 9..99 100 -> Plus
2R 20977317..20977466 100..249 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:35 Download gff for FMO07509.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16864660..16864750 9..99 100 -> Plus
arm_2R 16864822..16864971 100..249 98   Plus