Clone FMO07516 Report

Search the DGRC for FMO07516

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:75
Well:16
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6878-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO07516.5prime Sequence

263 bp (263 high quality bases) assembled on 2008-10-22

> FMO07516.5prime
CAGTCGACATGCCTCTGCCTACGAGCTCATTTTCCCAGCAGGGACCAACG
TGCTTCGATAAGATGAAGACGGGCTTCATCATCGGATTCTGCGTGGGCAT
GGCCAGCGGTGCGGTCTTTGGCGGGTTCTCGGCGCTCAGATACGGACTAC
GCGGGCGGGAGCTGATCAACAACGTGGGCAAGACCATGGTCCAGGGCGGC
GGAACCTTTGGCACCTTTATGGCCATCGGCACGGGGATTCGCTGCGCAAG
CTTTCTAGACCAT

FMO07516.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-RA 531 CG6878-RA 186..423 8..245 1190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162002..15162133 8..139 660 100 Plus
3L 28110227 3L 15162255..15162362 138..245 540 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:41:52 has no hits.

FMO07516.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:12:42 Download gff for FMO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 182..432 1..252 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:58 Download gff for FMO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 180..430 1..252 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:04 Download gff for FMO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 180..430 1..252 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:04 Download gff for FMO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15161996..15162133 1..139 97 -> Plus
3L 15162257..15162369 140..252 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:58 Download gff for FMO07516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15155096..15155233 1..139 97 -> Plus
arm_3L 15155357..15155469 140..252 96   Plus