FMO07530.5prime Sequence
230 bp (230 high quality bases) assembled on 2008-10-22
> FMO07530.5prime
CAGTCGACATGGACAAGGTTGTTAAGTTTGCCGAGCCTGGACGCGCCTTC
GCCAAGGACTCGATCCGCCTGGTCAAGCGGTGCACCAAGCCCGACCGCAA
GGAGTTCCAGAAGATCGCCATCGCCACTGCTGTGGGCTTCTGCATCATGG
GCTTCATCGGCTTCTTCGTTAAGTTGATACACATCCCCATCAACAATATC
ATCGTGGGCTCTGCAAGCTTTCTAGACCAT
FMO07530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61gamma-RC | 537 | CG14214-RC | 26..232 | 6..212 | 1035 | 100 | Plus |
| Sec61gamma-RB | 792 | CG14214-RB | 158..364 | 6..212 | 1035 | 100 | Plus |
| Sec61gamma-RA | 669 | CG14214-RA | 158..364 | 6..212 | 1035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19643884..19644090 | 6..212 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 12179594..12179793 | 208..9 | 685 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:33 has no hits.
FMO07530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:58 Download gff for
FMO07530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61gamma-RA | 150..362 | 1..216 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:09 Download gff for
FMO07530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61gamma-RA | 155..367 | 1..216 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:52 Download gff for
FMO07530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61gamma-RA | 155..367 | 1..216 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:52 Download gff for
FMO07530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19643881..19644093 | 1..216 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:09 Download gff for
FMO07530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19537914..19538126 | 1..216 | 97 | | Plus |
