FMO07535.5prime Sequence
257 bp (257 high quality bases) assembled on 2008-10-22
> FMO07535.5prime
CAGTCGACATGGCACGTGGACACCAGAAGATCCAGTCGCAGGCGAAGGCC
TCCGAGAAGCAGGCCAAACTAAAGAAGCAACAAGGACACAGTGCCAACGA
CCAGAAGAAGGCGGCCCAGAAGGCACTTGTCTATGTGTGCGCCGTTTGCA
AGTCGCAAATGCCCGATCCGAAGACTTACAAGCAGCATTTCGAGAACAAG
CATCCCAAGAATGACATGCCCGATGAGCTGAAGGAGGTCGCAAGCTTTCT
AGACCAT
FMO07535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18081-RC | 717 | CG18081-RC | 198..428 | 9..239 | 1155 | 100 | Plus |
| CG18081-RB | 886 | CG18081-RB | 86..316 | 9..239 | 1155 | 100 | Plus |
| CG18081-RA | 721 | CG18081-RA | 202..432 | 9..239 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15834734..15834877 | 152..9 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 15836780..15836923 | 152..9 | 705 | 99.3 | Minus |
| 3L | 28110227 | 3L | 15834365..15834453 | 239..151 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 15836162..15836250 | 239..151 | 325 | 91 | Minus |
Blast to na_te.dros performed 2014-11-28 22:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1443..1488 | 84..129 | 104 | 69.6 | Plus |
FMO07535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:48 Download gff for
FMO07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 194..430 | 1..239 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:19 Download gff for
FMO07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 196..432 | 1..239 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:45 Download gff for
FMO07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18081-RA | 196..432 | 1..239 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:45 Download gff for
FMO07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15834365..15834451 | 153..239 | 100 | <- | Minus |
| 3L | 15834734..15834883 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:19 Download gff for
FMO07535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15827465..15827551 | 153..239 | 100 | <- | Minus |
| arm_3L | 15827834..15827983 | 1..152 | 97 | | Minus |
