FMO07536.5prime Sequence
456 bp (456 high quality bases) assembled on 2008-10-22
> FMO07536.5prime
CAATCGACATGATACGATTCATACTTATACAAAACCGAGCTGGAAAAACT
CGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAGCAGAAACT
GATTGAGGAGGTGCATGCCGTGGTCACGGTGCGCGATGCCAAGCACACCA
ACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCTATGCGGGT
CTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTGTGCTATCT
GGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTTCCATAATG
TGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACAGTGTGGTG
GACGAAATGTTCCTGGCGGGCGAGATCCGGGAGACCTCTCACACGAAAGT
GCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGGCAAGCTTTCTAGACC
ATTCGG
FMO07536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-2sigma-RA | 751 | CG6056-RA | 123..548 | 9..434 | 2055 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21269412..21269686 | 434..160 | 1315 | 98.5 | Minus |
| 3R | 32079331 | 3R | 21269745..21269895 | 161..11 | 740 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:59 has no hits.
FMO07536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:05:50 Download gff for
FMO07536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2sigma-RA | 121..554 | 2..440 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:29 Download gff for
FMO07536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2sigma-RA | 119..552 | 2..440 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:10 Download gff for
FMO07536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-2sigma-RA | 119..552 | 2..440 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:10 Download gff for
FMO07536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21269408..21269684 | 162..440 | 97 | <- | Minus |
| 3R | 21269745..21269905 | 1..161 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:29 Download gff for
FMO07536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17095130..17095406 | 162..440 | 97 | <- | Minus |
| arm_3R | 17095467..17095627 | 1..161 | 96 | | Minus |
