FMO07537.5prime Sequence
329 bp (329 high quality bases) assembled on 2008-10-22
> FMO07537.5prime
CAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGGATGCCGCT
CAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTCATGCTTGT
GGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTACAAGTACC
GGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGCTGCGAGTC
GCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTGGCCTACAG
CATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAACACAAAGT
CATTGACTAACGCAAGCTTTCTAGACCAT
FMO07537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 764 | CG17734-RA | 125..427 | 9..311 | 1515 | 100 | Plus |
| CG17734-RB | 1024 | CG17734-RB | 125..408 | 9..292 | 1420 | 100 | Plus |
| CG17734-RC | 1317 | CG17734-RC | 511..701 | 102..292 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242824..11243014 | 292..102 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 10420733..10421003 | 279..9 | 695 | 83.8 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 104..9 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:59 has no hits.
FMO07537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:08 Download gff for
FMO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 95..409 | 1..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:10 Download gff for
FMO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 118..432 | 1..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:08 Download gff for
FMO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 118..432 | 1..316 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:08 Download gff for
FMO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11242540..11242563 | 293..316 | 91 | <- | Minus |
| 3R | 11242824..11243013 | 103..292 | 100 | <- | Minus |
| 3R | 11243782..11243882 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:10 Download gff for
FMO07537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7068262..7068285 | 293..316 | 91 | <- | Minus |
| arm_3R | 7068546..7068735 | 103..292 | 100 | <- | Minus |
| arm_3R | 7069504..7069604 | 1..102 | 96 | | Minus |
