FMO07538.5prime Sequence
468 bp (468 high quality bases) assembled on 2008-10-22
> FMO07538.5prime
CAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCTTCAAGATG
ACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGCACCAAGCA
CTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCACAAATGGC
GCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCAAGGGACAG
TATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACCCGCCACAT
GCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCGCGAGCTGG
AGGTCCTGCTCATGCATAACCGCGTTTACTGCGGCGAGATCGCCCACGGC
GTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAGCAGCTGTC
GGTCCGCCTCACCAACCCCAACGGACGCCTGCGTTCTCAAGAAAACGAGG
CAAAGCTTTCTAGACCAT
FMO07538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL32-RC | 747 | CG7939-RC | 220..660 | 9..449 | 2160 | 99.3 | Plus |
| RpL32-RD | 747 | CG7939-RD | 275..688 | 36..449 | 2010 | 99 | Plus |
| RpL32-RB | 524 | CG7939-RB | 28..437 | 40..449 | 2005 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30045316..30045625 | 449..140 | 1505 | 99 | Minus |
| 3R | 32079331 | 3R | 30045687..30045787 | 140..40 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:53 has no hits.
FMO07538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:10 Download gff for
FMO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 214..667 | 1..458 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:10 Download gff for
FMO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 214..667 | 1..458 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:11 Download gff for
FMO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 214..667 | 1..458 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:11 Download gff for
FMO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30045309..30045624 | 141..458 | 98 | <- | Minus |
| 3R | 30045687..30045786 | 41..140 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:10 Download gff for
FMO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25871031..25871346 | 141..458 | 98 | <- | Minus |
| arm_3R | 25871409..25871508 | 41..140 | 100 | <- | Minus |
