FMO07539.5prime Sequence
488 bp (488 high quality bases) assembled on 2008-10-22
> FMO07539.5prime
CAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATGAGGGCGTC
AATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTCCTCGAGAC
GGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAAGGACAAGC
GTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCAAGATGAAG
GTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAGGCCAACAA
CGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAAGAACAAGA
AGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGGCCTCTGAG
TCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGTCTTGAACAAGGC
CGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGATTGGCAAGA
TCGAGGAGGTTAAGTCGACCATCTAGTTCCAGATGAAG
FMO07539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL10Ab-RA | 750 | CG7283-RA | 36..515 | 9..488 | 2370 | 99.6 | Plus |
| RpL10Ab-RF | 960 | CG7283-RF | 407..725 | 170..488 | 1565 | 99.4 | Plus |
| RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 9..171 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11823658..11823976 | 170..488 | 1565 | 99.4 | Plus |
| 3L | 28110227 | 3L | 11823200..11823357 | 14..171 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:31 has no hits.
FMO07539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:11 Download gff for
FMO07539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10Ab-RA | 27..514 | 1..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:15 Download gff for
FMO07539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10Ab-RA | 28..515 | 1..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:53 Download gff for
FMO07539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10Ab-RA | 28..515 | 1..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:53 Download gff for
FMO07539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11823197..11823355 | 8..169 | 98 | -> | Plus |
| 3L | 11823658..11823976 | 170..488 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:15 Download gff for
FMO07539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11816758..11817076 | 170..488 | 99 | | Plus |
| arm_3L | 11816297..11816455 | 8..169 | 98 | -> | Plus |
