FMO07540.5prime Sequence
458 bp (458 high quality bases) assembled on 2008-10-22
> FMO07540.5prime
CAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAGTGGCCCTG
ATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTCATTGCATT
CGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTGCAATAGCC
TCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTCTGAACTTG
CTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAACATACCCCT
CATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGATGTCGGGAC
CCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTTTGTACCGG
AACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATTAGCTTCTT
CTACTACATATACGGCATGGTTTATTCGCTCATCTCGACAGCAAGCTTTC
TAGACCAT
FMO07540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cni-RC | 1132 | CG5855-RC | 87..518 | 9..440 | 2160 | 100 | Plus |
| cni-RB | 878 | CG5855-RB | 137..568 | 9..440 | 2160 | 100 | Plus |
| cni-RA | 811 | CG5855-RA | 70..501 | 9..440 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16310441..16310590 | 158..9 | 750 | 100 | Minus |
| 2L | 23513712 | 2L | 16310000..16310144 | 415..271 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 16310267..16310380 | 271..158 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:34 has no hits.
FMO07540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:06:13 Download gff for
FMO07540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cni-RB | 93..534 | 9..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:56 Download gff for
FMO07540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cni-RA | 70..511 | 9..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:47 Download gff for
FMO07540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cni-RA | 70..511 | 9..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:47 Download gff for
FMO07540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16309896..16309930 | 416..447 | 91 | <- | Minus |
| 2L | 16310000..16310143 | 272..415 | 100 | <- | Minus |
| 2L | 16310267..16310379 | 159..271 | 100 | <- | Minus |
| 2L | 16310441..16310590 | 9..158 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:56 Download gff for
FMO07540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16310441..16310590 | 9..158 | 100 | | Minus |
| arm_2L | 16309896..16309930 | 416..447 | 91 | <- | Minus |
| arm_2L | 16310000..16310143 | 272..415 | 100 | <- | Minus |
| arm_2L | 16310267..16310379 | 159..271 | 100 | <- | Minus |
